AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04266 ATGTCTTCTGTTGCTCCAATTCATCAATCTGCTCTCACCGGAAACAACCGTCACGTAAATCCGGCGAGGCATATTCCCGGCCTCCAATTACCAAACCTCACCAGCAAAAAACTCGTCGATTTCACTGGTTTTTCTCTCCGATCAAAGCAAATTAGCCTAGATTTACTATCAAATCGACATGCTATTCCCTGCGCCGGCGGCGATGGCGGTAGTTCCGGCGGCGGTCACGGCAGTGGCGGAGGAGGTGACGGTGGTGGTAGTGACTGGAACAGCAGCGGAGGCGGAAGATCCGATGACTCATCATCATCAGACAGTTTCGGTCCAATTGGGGCTTTTCTTAGCGGTTGGAGATCTAGGGTTGCTGCTGATCCGCAATTTCCTTTCAAGGTTTTAATGGAAGAAGTTGTAGGTGTGAGTGCGAACGTGTTTGGTGACATGGCGACTCGCCCGAACTTCGGTCTAAACGAACTCGATTTCGTGTTCTCAACACTTGTCGTTGGTTCAATCTTGAATTTCACCCTCATGTATCTGTTAGCACCCACCATGACATCTGGATCATCAACCCTTCCTTCAATCTTTGCCAATTCACCCGCGAGCCACATGTTTGAACCCGGTCCATACACCTTGGTTAACCGGTTAGGTACATTTGTCTACAAAGGAGCCGTGTTTGCAGCCGTGGGTTTCGCAGCTGGTTTAGTTGGAACCGCGTTGTCAAACGGGTTGATCAAGATGCGGAAAAAGATGGACCCAAGTTTCGAGTCACCAAACAAGGCTCCACCGACTGTTTTAAATGCCACCACTTGGGCGATTCATATGGGTATAAGCAGTAATCTGAGATACCAAAGTTTAAACGGGATCGAGTTCATGCTCGAGAAAGGATTATCGCCATTTTTATTCAAGAGTTCAGTTGTCGGGTTGCGGTTGGTGAATAATGTTCTTGGTGGAATGACATTTGTAATGTTAGCAAGGTTGACTGGATCACAAAGTGCTGGTGGTGAACAAGACAAGATTGCTGATGAAGAAAGTTCAGATGAGGAGAAAAAGTTACTGATCAATGAAATTGCTTCAAAGTAA 1074 47.02 MSSVAPIHQSALTGNNRHVNPARHIPGLQLPNLTSKKLVDFTGFSLRSKQISLDLLSNRHAIPCAGGDGGSSGGGHGSGGGGDGGGSDWNSSGGGRSDDSSSSDSFGPIGAFLSGWRSRVAADPQFPFKVLMEEVVGVSANVFGDMATRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTMTSGSSTLPSIFANSPASHMFEPGPYTLVNRLGTFVYKGAVFAAVGFAAGLVGTALSNGLIKMRKKMDPSFESPNKAPPTVLNATTWAIHMGISSNLRYQSLNGIEFMLEKGLSPFLFKSSVVGLRLVNNVLGGMTFVMLARLTGSQSAGGEQDKIADEESSDEEKKLLINEIASK 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04266 357 Pfam Protein RETICULATA-related 119 286 IPR021825 -
Stre1g04266 357 MobiDBLite consensus disorder prediction 1 28 - -
Stre1g04266 357 MobiDBLite consensus disorder prediction 1 17 - -
Stre1g04266 357 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 33 330 - -
Stre1g04266 357 MobiDBLite consensus disorder prediction 90 104 - -
Stre1g04266 357 MobiDBLite consensus disorder prediction 66 104 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04266 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5190726 Stre Stre1g04266 Stre-Chr1:128619388 Stre9g01359 Stre-Chr9:22696348
5211436 Stre Stre1g04261 Stre-Chr1:128523731 Stre1g04266 Stre-Chr1:128619388