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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02228 ATGGCTTCCGAACCATCAACGAAACGCAAGTGGTCCATCAACGATTTCGAGATCGGAAAGCCTCTCGGCAAGGGCAAGTTCGGCCGCGTATACCTCGCTCGTGAATCAAAGAGCAAGTATATAGTGGCGTTGAAAGTGATATTCAAGGAGCAGATTGACAAGTACAGGCTGCAACACCAGCTCAAGAGAGAGATGGCCATTCAAACCAATCTTCGTCATCCCCATGTTCTCCGCCTTTACGGCTGGTTTCACGATGCCCATAGGATTTTTCTCATTTTGGAGTATGCTCATCGAGGCGAGCTCTATACGGAGCTTAGTAGATCCGGTTCTTTCTCTGAGCCACAAGCTGCCACTTACATTGCTAGCCTTACGAGTGCATTAGCATACTGTCACGAGAAGCATGTTATCCATCGCGATATCAAGCCGGAGAACTTGTTGCTTGATCACGAGGGTCGGTTAAAGATAGCTGATTTTGGGTGGTCTGTTCAGTCTAAAAACAAGAGACACACAATGTGCGGAACATTAGACTATCTAGCACCCGAGATGGTGGAAAATAAAGCTCATGATTATGCAGTTGATAATTGGACTTTGGGTGTTTTATGTTATGAGTTTCTTTATGGTGTCCCTCCTTTCGAGGCAGACAATCAAGCAGATACATTTAGAAGGATTATGAAGGTTGACCTCAGTTTTCCTTCTACCCCTCATGTTTCCGCTGAAGCTAAAACTCTCATCACACAACTTCTAGTGAAAGACTCTGCAAAAAGGCTCTCACTTGAGAAGATACTGAAGCATCCTTGGATTGTCTTGAATGCTGATCCCAATGGTACCTTTCCTAAATAG 840 44.88 MASEPSTKRKWSINDFEIGKPLGKGKFGRVYLARESKSKYIVALKVIFKEQIDKYRLQHQLKREMAIQTNLRHPHVLRLYGWFHDAHRIFLILEYAHRGELYTELSRSGSFSEPQAATYIASLTSALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGVLCYEFLYGVPPFEADNQADTFRRIMKVDLSFPSTPHVSAEAKTLITQLLVKDSAKRLSLEKILKHPWIVLNADPNGTFPK 279
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02228 279 SUPERFAMILY Protein kinase-like (PK-like) 8 268 IPR011009 -
Cobi2g02228 279 ProSiteProfiles Protein kinase domain profile. 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cobi2g02228 279 Gene3D Transferase(Phosphotransferase) domain 1 100 275 - -
Cobi2g02228 279 SMART serkin-6 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cobi2g02228 279 CDD STKc-Aurora 15 268 - -
Cobi2g02228 279 PIRSF ILK 2 265 - -
Cobi2g02228 279 FunFam Serine-threonine-protein kinase ark1 8 277 - -
Cobi2g02228 279 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cobi2g02228 279 ProSitePatterns Serine-Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cobi2g02228 279 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524(InterPro)
Cobi2g02228 279 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 4 275 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Cobi2g02228 279 FunFam Aurora kinase A 8 99 - -
Cobi2g02228 279 Gene3D Phosphorylase Kinase; domain 1 4 99 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02228 K08850 aurora kinase, other [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1783100 Cobi Cobi10g00680 Cobi-Chr10:5829159 Cobi2g02228 Cobi-Chr2:68639296
1795179 Cobi Cobi2g02228 Cobi-Chr2:68639296 Cobi8g01915 Cobi-Chr8:69046545
1812576 Cobi Cobi2g02220 Cobi-Chr2:68510183 Cobi2g02228 Cobi-Chr2:68639296
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi3g00442 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G10930 61.83 0.0 567.0
Cobi3g01386 . 74 319 CBL-interacting serine-threonine protein kinases family AT5G25110 41.353 5.67e-60 197.0
Cobi1g04062 . 38 468 CBL-interacting serine-threonine protein kinases family AT5G25110 69.284 0.0 634.0
Cobi1g04953 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 39.739 1.23e-67 218.0
Cobi2g02886 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.756 3.35e-93 289.0
Cobi2g02228 . 4 277 CBL-interacting serine-threonine protein kinases family AT5G10930 39.711 7.44e-64 205.0
Cobi2g02188 . 18 426 CBL-interacting serine-threonine protein kinases family AT5G01820 63.397 1.69e-177 501.0
Cobi11g00760 . 55 270 CBL-interacting serine-threonine protein kinases family AT2G26980 53.241 6.19e-78 246.0
Cobi11g01649 ACH,WGDA 19 263 CBL-interacting serine-threonine protein kinases family AT3G17510 27.211 2.41e-12 65.5
Cobi11g02208 . 341 460 CBL-interacting serine-threonine protein kinases family AT1G30270 60.833 3.24e-42 145.0
Cobi11g02213 . 6 334 CBL-interacting serine-threonine protein kinases family AT2G26980 81.155 0.0 573.0
Cobi9g00522 . 18 273 CBL-interacting serine-threonine protein kinases family AT5G10930 34.47 6.64e-45 162.0
Cobi9g00514 . 1 452 CBL-interacting serine-threonine protein kinases family AT5G58380 62.693 0.0 586.0
Cobi9g00509 . 10 422 CBL-interacting serine-threonine protein kinases family AT2G30360 59.809 4.95e-176 496.0
Cobi6g02483 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.934 6.04e-69 222.0
Cobi10g00203 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 43.243 1.42e-70 225.0
Cobi10g00680 WGDA 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.0 6.83e-55 182.0
Cobi4g00489 . 28 471 CBL-interacting serine-threonine protein kinases family AT1G30270 81.879 0.0 767.0
Cobi4g00551 . 9 410 CBL-interacting serine-threonine protein kinases family AT5G45820 58.744 0.0 524.0
Cobi4g00947 ACH,WGDA 10 318 CBL-interacting serine-threonine protein kinases family AT5G58380 25.281 1.20e-13 70.9
Cobi4g01023 . 18 279 CBL-interacting serine-threonine protein kinases family AT2G30360 38.519 4.50e-50 179.0
Cobi5g00882 . 15 466 CBL-interacting serine-threonine protein kinases family AT4G18700 76.77 0.0 709.0
Cobi5g00883 . 1 425 CBL-interacting serine-threonine protein kinases family AT5G45820 66.962 0.0 615.0
Cobi10g01678 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 1.28e-65 210.0
Cobi10g01589 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 55.824 0.0 519.0
Cobi10g01419 . 10 429 CBL-interacting serine-threonine protein kinases family AT5G01820 58.962 5.29e-165 469.0
Cobi10g01325 . 1 445 CBL-interacting serine-threonine protein kinases family AT5G35410 71.011 0.0 663.0
Cobi12g01849 . 1 443 CBL-interacting serine-threonine protein kinases family AT5G10930 62.247 0.0 577.0
Cobi12g01609 . 42 301 CBL-interacting serine-threonine protein kinases family AT5G25110 43.223 1.38e-66 216.0
Cobi12g01455 . 14 374 CBL-interacting serine-threonine protein kinases family AT4G14580 59.78 5.39e-155 443.0
Cobi12g00919 WGDA 6 263 CBL-interacting serine-threonine protein kinases family AT5G35410 34.962 5.86e-47 166.0
Cobi6g00270 . 1 445 CBL-interacting serine-threonine protein kinases family AT5G58380 63.087 0.0 586.0
Cobi6g00271 . 17 385 CBL-interacting serine-threonine protein kinases family AT2G30360 61.351 3.62e-164 468.0
Cobi6g00803 . 13 311 CBL-interacting serine-threonine protein kinases family AT2G26980 38.438 5.94e-67 214.0
Cobi6g00857 . 16 455 CBL-interacting serine-threonine protein kinases family AT4G18700 77.551 0.0 708.0
Cobi6g00923 . 11 434 CBL-interacting serine-threonine protein kinases family AT5G01820 59.953 1.42e-170 484.0
Cobi6g00924 . 1 443 CBL-interacting serine-threonine protein kinases family AT5G58380 52.584 1.48e-168 479.0
Cobi3g02840 . 8 326 CBL-interacting serine-threonine protein kinases family AT4G24400 39.64 2.86e-66 214.0
Cobi3g02460 . 103 262 CBL-interacting serine-threonine protein kinases family AT4G24400 45.0 6.53e-40 143.0
Cobi3g02124 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.362 2.32e-90 280.0
Cobi3g01677 . 8 289 CBL-interacting serine-threonine protein kinases family AT4G24400 42.517 9.95e-70 223.0
Cobi5g00429 . 13 214 CBL-interacting serine-threonine protein kinases family AT2G25090 28.218 4.46e-18 86.7
Cobih2tg0040l_1g00076 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 43.243 1.47e-70 225.0
Cobi6g04000 . 86 248 CBL-interacting serine-threonine protein kinases family AT4G24400 47.126 3.06e-42 145.0
Cobi6g04002 . 17 86 CBL-interacting serine-threonine protein kinases family AT3G17510 37.143 1.71e-09 50.4
Cobih2tg0044l_1g00032 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 41.042 2.83e-69 222.0
Cobi8g02538 . 2 270 CBL-interacting serine-threonine protein kinases family AT2G26980 49.442 4.26e-92 284.0
Cobi8g02461 . 2 298 CBL-interacting serine-threonine protein kinases family AT4G24400 40.584 2.69e-68 219.0
Cobi1g00457 . 12 438 CBL-interacting serine-threonine protein kinases family AT4G30960 74.419 0.0 620.0
Cobi2g03233 WGDA 6 271 CBL-interacting serine-threonine protein kinases family AT5G35410 34.307 6.67e-47 165.0
Cobi4g03351 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 41.042 2.83e-69 222.0
Cobi7g02186 . 28 467 CBL-interacting serine-threonine protein kinases family AT1G30270 84.091 0.0 781.0
Cobi7g01818 . 14 438 CBL-interacting serine-threonine protein kinases family AT4G30960 73.302 0.0 622.0
Cobi7g01276 . 1 444 CBL-interacting serine-threonine protein kinases family AT4G24400 79.596 0.0 752.0
Cobi7g01249 . 57 274 CBL-interacting serine-threonine protein kinases family AT2G26980 22.568 5.23e-08 54.3
Cobi7g01242 . 6 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.14 3.38e-89 278.0
Cobi7g00912 . 1 379 CBL-interacting serine-threonine protein kinases family AT2G30360 61.316 4.18e-170 480.0
Cobi7g00442 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.279 5.53e-66 212.0
Cobi1g02661 . 1 425 CBL-interacting serine-threonine protein kinases family AT5G45820 59.954 0.0 535.0
Cobi4g01466 . 16 441 CBL-interacting serine-threonine protein kinases family AT4G30960 75.234 0.0 619.0
Cobi8g01915 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.125 3.54e-55 183.0
Cobi1g02318 . 5 439 CBL-interacting serine-threonine protein kinases family AT5G10930 63.492 0.0 598.0
Cobi1g01904 . 1 452 CBL-interacting serine-threonine protein kinases family AT5G58380 66.667 0.0 625.0
Cobi6g03937 . 8 306 CBL-interacting serine-threonine protein kinases family AT4G24400 40.575 3.60e-66 213.0
Cobi10g01071 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 38.182 1.15e-54 187.0
Cobi10g01072 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 38.182 1.15e-54 187.0
Cobi10g01074 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 38.182 6.72e-53 187.0
Cobi5g02503 . 2 447 CBL-interacting serine-threonine protein kinases family AT1G01140 73.318 0.0 697.0
Cobi5g02202 . 15 466 CBL-interacting serine-threonine protein kinases family AT4G18700 74.779 0.0 687.0
Cobi4g00434 . 28 471 CBL-interacting serine-threonine protein kinases family AT1G30270 81.655 0.0 764.0
Cobi1g01288 . 262 374 CBL-interacting serine-threonine protein kinases family AT4G30960 48.718 9.31e-21 84.0
Cobih2tg0715l_1g00006 . 16 441 CBL-interacting serine-threonine protein kinases family AT4G30960 74.766 0.0 615.0
Cobih2tg0840l_1g00004 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 1.79e-66 213.0
Cobi9g01495 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 71.889 0.0 652.0
Cobi4g02364 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 1.59e-66 213.0
Cobi6g03167 . 12 284 CBL-interacting serine-threonine protein kinases family AT2G25090 31.387 8.28e-38 146.0
Cobi6g02839 . 11 444 CBL-interacting serine-threonine protein kinases family AT3G17510 67.431 0.0 597.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cobi Pkinase 3.6e-76 CL0016 PK Aur