AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00523 ATGGAGCATGACAAGAAGAAGAAAGGGAAGAAAAAGAAGAATAAGCAGGGAAAAACAAGTGCAACTGCTGGTGTTGGGGAATTGACTTCAGAAAATAACAATCATGCAAATACGGCAAATCAGAAGAATCATCAGAACGTGAATTCTGATGGTTCGGATGTGCCGAAAAGGGGTCTGCAGCAAGCAGTTGTGGATTCAGATAGAGAGTCCATCAGTGGAGCTGAAACTTCCCGTTCAGTTGAGGCTGAGAAGTCCTATTGGTTAAACCGAGAGTCTTCCCTAGAACAAAAAATCAAAGAACTACAAGAGCAATTGGACATACATGTACAAAGGGAGGCTGATCTTGAGAGAAATATTTCACAATCACAGAAAGAAAGAAATTCATGGCATCATAAAGAGACTGAGCTCGAGGCAACAATTTCACAGTTACAAACAGAAAAATGCGCTTGGCTTCAAAAAGAGGCTGCTTGTGAAGAAAAATTGAATCAGTTGGTTGAAGAAACATCTGCTCTGCGATCAATGGAGGCTTGCTTCGAAGAAAAACGTATCCAGATGGAAACAGAAAAGGTTGACTTGGCACTAAGAGAGAACTCTGCAGCAGAAACAATTGCATCTTTGATCAAGGACAATGCAAAATTACATGCACAAGTGATTGAGCTGGAAACGACTTCAAATAATATTTCCCACCAAAATCAGCAGCTGAAAGAACATGTTTCTGATCTTCAGTCAAAGATTCAGGATCTTGAAAATTCTGTAGCTACCCATTTATCTTCTGAAAGGACAAGGAACATTACTGCATACGAGGGCATGAATTTACAGTTGGAATCTGCACAAGCACTTGTTGCAAAATTGCTTTCTGAAAATGATATTTTAGTTGAGAAGGTCAACGTCTTAAAAACGGAGCTTGACCAAAAGACTGCAACAACCCAATCATCTTCACCTATTAAACCTGTTGACCCGTTAGTCAAAATTTCCAAAGCTGCTGACATGGATGAAACTTCAACTACTGAAACTGATTCAATGCTCTCATCAGCTGAAACTGACACAGTCAGCAACATGGGCCCATCAGATACACTTGTGAATCATATGCATTCAGAGGGTTCAAATTTGAATCAAATTTCTCGCGTAAGCATGGAGTCTGGAGAAATTGTGCAGATTTCATTAAACGAGATAGATGTCGCAGCTGCCACATCAGCAATCTATGTTCCCGAGGATTCCGACCCGGTGCCTATCACAGACGCTCCGCTCATCGGTGCTCCATTCAGGTTTATATCGTTTGTTGCCAGATACGTGAGTGGGGCCGACTTGGTTCAGAAGTAA 1320 41.29 MEHDKKKKGKKKKNKQGKTSATAGVGELTSENNNHANTANQKNHQNVNSDGSDVPKRGLQQAVVDSDRESISGAETSRSVEAEKSYWLNRESSLEQKIKELQEQLDIHVQREADLERNISQSQKERNSWHHKETELEATISQLQTEKCAWLQKEAACEEKLNQLVEETSALRSMEACFEEKRIQMETEKVDLALRENSAAETIASLIKDNAKLHAQVIELETTSNNISHQNQQLKEHVSDLQSKIQDLENSVATHLSSERTRNITAYEGMNLQLESAQALVAKLLSENDILVEKVNVLKTELDQKTATTQSSSPIKPVDPLVKISKAADMDETSTTETDSMLSSAETDTVSNMGPSDTLVNHMHSEGSNLNQISRVSMESGEIVQISLNEIDVAAATSAIYVPEDSDPVPITDAPLIGAPFRFISFVARYVSGADLVQK 439
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00523 439 Coils Coil 231 251 - -
Smso28g00523 439 MobiDBLite consensus disorder prediction 1 17 - -
Smso28g00523 439 MobiDBLite consensus disorder prediction 1 82 - -
Smso28g00523 439 MobiDBLite consensus disorder prediction 330 350 - -
Smso28g00523 439 MobiDBLite consensus disorder prediction 18 55 - -
Smso28g00523 439 Coils Coil 267 294 - -
Smso28g00523 439 Coils Coil 91 125 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00523 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337966 Smso28g00523 Smso1g03558
357521 Smso1g03558 Smso28g00523
429017 Smso1g03558 Smso28g00523
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4984999 Smso Smso28g00523 Smso-Chr28:14738460 Smso5g00163 Smso-Chr5:2128926
5027938 Smso Smso1g03558 Smso-Chr1:120522056 Smso28g00523 Smso-Chr28:14738460