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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00885 ATGGCTATCGAACCACTGAAACGAAACTGGTCAATTCACGATTTCGAGATCGGAAAACCCCTCGGAAAAGGGAAATTCGGTCGGGTCTATCTTGCCCGTGAAGCGAAGAGCGAGTATATAGTCGCATTGAAGGTGATATTCAAAGAGCAGATTGAAAAGTACAGGCTGCAGCACCAGCTGAAGAGGGAGATGGCGATCCAAACCAGCCTTCGACATCCGCATGTTCTCAGGCTGTACGGATGGTTTCACGATGCGGAGAGGATATTCTTGATTTTGGAGTATGCTCATGGCGGTGAGCTGTACGGGGAGCTTCGGAGATCGGGTCATCTATCGGAGAAACAAGCTGCCACTTACATTGCTAGCCTTACCCAAGCATTAGCATACTGTCATGAAAAGCATGTTATCCATCGGGATATCAAGCCAGAGAATTTGTTGCTTGATCACAAGGGTCGATTGAAGATAGCTGATTTCGGGTGGTCTGTGCAGTCAAAAAACAAGAGACACACGATGTGTGGAACATTAGACTATCTAGCACCAGAGATGGTGGAAAATAAAGCTCATGATTATGCAGTTGATAATTGGACTTTAGGCGTTTTATGTTATGAATTTCTCTATGGTGTCCCTCCTTTTGAGGCAGACAGCCAAGCAGATACATTTCGAAGGATCATGAAGGTTGACCTTACATTTCCTTCTACCCCTCATGTTTCTGATGAAGCTAAAGTTCTCATCACACAACTTTTGGTGAAAGACTCTGCAAAAAGACTCTCCCTTGAGAAGATATTGAAGCATCCTTGGATCATCATGAATGCTGATCCCAATGGTACTTTCTCTAAGTAG 837 44.56 MAIEPLKRNWSIHDFEIGKPLGKGKFGRVYLAREAKSEYIVALKVIFKEQIEKYRLQHQLKREMAIQTSLRHPHVLRLYGWFHDAERIFLILEYAHGGELYGELRRSGHLSEKQAATYIASLTQALAYCHEKHVIHRDIKPENLLLDHKGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGVLCYEFLYGVPPFEADSQADTFRRIMKVDLTFPSTPHVSDEAKVLITQLLVKDSAKRLSLEKILKHPWIIMNADPNGTFSK 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00885 278 ProSitePatterns Serine-Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Fli3g00885 278 CDD STKc-Aurora 14 266 - -
Fli3g00885 278 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524(InterPro)
Fli3g00885 278 Pfam Protein kinase domain 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00885 278 FunFam Aurora kinase A 7 98 - -
Fli3g00885 278 Gene3D Phosphorylase Kinase; domain 1 4 97 - -
Fli3g00885 278 Gene3D Transferase(Phosphotransferase) domain 1 98 275 - -
Fli3g00885 278 SMART serkin-6 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00885 278 SUPERFAMILY Protein kinase-like (PK-like) 9 268 IPR011009 -
Fli3g00885 278 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00885 278 PIRSF ILK 4 269 - -
Fli3g00885 278 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 5 275 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Fli3g00885 278 FunFam Serine-threonine-protein kinase ark1 7 278 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00885 K08850 aurora kinase, other [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2355620 Fli Fli12g01603 Fli-Chr12:65397381 Fli3g00885 Fli-Chr3:24533271
2357963 Fli Fli14g00678 Fli-Chr14:12030265 Fli3g00885 Fli-Chr3:24533271
2370490 Fli Fli3g00885 Fli-Chr3:24533271 Fli5g01230 Fli-Chr5:24661063
2396908 Fli Fli1g02157 Fli-Chr1:101921949 Fli3g00885 Fli-Chr3:24533271
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli1g00823 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 1.70e-66 213.0
Fli1g01760 . 16 441 CBL-interacting serine-threonine protein kinases family AT4G30960 72.897 0.0 611.0
Fli1g02220 . 19 279 CBL-interacting serine-threonine protein kinases family AT2G30360 37.918 4.10e-52 185.0
Fli1g02306 ACH,WGDA 10 318 CBL-interacting serine-threonine protein kinases family AT5G58380 24.719 1.63e-12 67.4
Fli1g02465 ACH,WGDA 37 73 CBL-interacting serine-threonine protein kinases family AT5G25110 48.649 1.68e-06 42.4
Fli1g02805 . 2 410 CBL-interacting serine-threonine protein kinases family AT5G45820 59.545 0.0 540.0
Fli1g02806 . 16 455 CBL-interacting serine-threonine protein kinases family AT4G18700 74.773 0.0 679.0
Fli1g02863 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 83.953 0.0 769.0
Fli2g00228 . 38 470 CBL-interacting serine-threonine protein kinases family AT5G25110 68.109 0.0 640.0
Fli2g02077 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.362 9.76e-92 283.0
Fli2g02079 . 14 136 CBL-interacting serine-threonine protein kinases family AT4G14580 57.724 3.97e-43 145.0
Fli2g02755 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 85.116 0.0 778.0
Fli2g03156 . 64 450 CBL-interacting serine-threonine protein kinases family AT5G58380 56.171 1.95e-157 449.0
Fli3g00346 . 15 422 CBL-interacting serine-threonine protein kinases family AT2G30360 61.858 0.0 516.0
Fli3g00885 . 12 277 CBL-interacting serine-threonine protein kinases family AT5G10930 40.149 8.30e-63 202.0
Fli3g00941 . 18 428 CBL-interacting serine-threonine protein kinases family AT5G01820 59.08 6.87e-172 488.0
Fli3g01878 . 9 275 CBL-interacting serine-threonine protein kinases family AT2G26980 33.455 6.02e-46 160.0
Fli4g00393 . 14 439 CBL-interacting serine-threonine protein kinases family AT4G30960 73.832 0.0 624.0
Fli4g02205 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 42.105 7.97e-67 215.0
Fli5g01230 . 4 268 CBL-interacting serine-threonine protein kinases family AT5G10930 71.698 5.01e-152 430.0
Fli5g02053 . 79 451 CBL-interacting serine-threonine protein kinases family AT5G58380 64.171 4.13e-177 499.0
Fli7g00653 . 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 27.653 2.20e-13 68.9
Fli7g00997 . 264 445 CBL-interacting serine-threonine protein kinases family AT4G24400 70.109 2.25e-90 269.0
Fli7g00998 . 1 262 CBL-interacting serine-threonine protein kinases family AT4G24400 87.786 2.99e-175 489.0
Fli7g01070 . 86 265 CBL-interacting serine-threonine protein kinases family AT4G24400 53.333 2.44e-61 202.0
Fli7g01506 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 68.736 0.0 635.0
Fli7g01507 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 57.883 1.60e-178 504.0
Fli8g00766 . 30 274 CBL-interacting serine-threonine protein kinases family AT1G30270 28.782 1.70e-20 89.7
Fli8g00833 . 3 389 CBL-interacting serine-threonine protein kinases family AT5G45820 67.718 0.0 557.0
Fli9g00410 . 60 447 CBL-interacting serine-threonine protein kinases family AT1G01140 75.258 0.0 618.0
Fli9g00651 . 15 201 CBL-interacting serine-threonine protein kinases family AT4G18700 83.957 1.43e-114 333.0
Fli9g00652 . 15 201 CBL-interacting serine-threonine protein kinases family AT4G18700 85.027 8.84e-116 337.0
Fli9g00968 . 115 161 CBL-interacting serine-threonine protein kinases family AT1G01140 40.426 8.64e-08 53.1
Fli9g01570 . 15 472 CBL-interacting serine-threonine protein kinases family AT4G18700 78.431 0.0 736.0
Fli10g00240 . 12 438 CBL-interacting serine-threonine protein kinases family AT4G30960 71.329 0.0 607.0
Fli10g01552 . 115 161 CBL-interacting serine-threonine protein kinases family AT1G01140 40.426 9.75e-08 53.1
Fli11g01864 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.756 8.83e-94 290.0
Fli11g02375 . 12 282 CBL-interacting serine-threonine protein kinases family AT2G25090 40.989 7.13e-64 208.0
Fli12g00718 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 40.264 1.87e-68 221.0
Fli12g00825 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 3.32e-92 284.0
Fli12g01603 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.842 1.45e-55 184.0
Fli13g00971 . 5 196 CBL-interacting serine-threonine protein kinases family AT4G18700 35.859 4.20e-38 135.0
Fli13g01357 . 10 446 CBL-interacting serine-threonine protein kinases family AT1G01140 69.565 0.0 640.0
Fli14g00225 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 43.86 4.93e-71 226.0
Fli14g00678 WGDA 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 34.643 4.45e-54 180.0
Fli14g00998 . 19 277 CBL-interacting serine-threonine protein kinases family AT2G30360 38.202 1.31e-49 178.0
Fli14g01003 . 19 277 CBL-interacting serine-threonine protein kinases family AT2G30360 38.202 1.13e-49 178.0
Fli14g01453 . 14 403 CBL-interacting serine-threonine protein kinases family AT2G30360 59.079 1.36e-154 441.0
Fli14g01730 . 170 226 CBL-interacting serine-threonine protein kinases family AT2G26980 71.93 1.75e-26 97.4
Fli14g01868 . 8 310 CBL-interacting serine-threonine protein kinases family AT4G24400 40.0 9.50e-67 215.0
Fli15g00197 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 57.848 5.41e-179 505.0
Fli15g00198 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 68.958 0.0 637.0
Fli16g01546 . 57 126 CBL-interacting serine-threonine protein kinases family AT2G25090 70.0 3.22e-28 105.0
Fli17g00517 . 11 263 CBL-interacting serine-threonine protein kinases family AT3G17510 25.402 4.13e-11 62.0
Fli17g01269 . 2 288 CBL-interacting serine-threonine protein kinases family AT2G25090 31.973 2.59e-44 159.0
Fli18g00491 . 10 126 CBL-interacting serine-threonine protein kinases family AT2G25090 51.282 8.76e-32 117.0
Fli18g01329 . 42 301 CBL-interacting serine-threonine protein kinases family AT5G25110 43.956 1.01e-67 218.0
Fli18g01474 . 14 369 CBL-interacting serine-threonine protein kinases family AT4G14580 56.425 1.42e-136 394.0
Fli10000075.1g00004 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 40.065 6.79e-68 218.0
Fli10000747.1g00003 . 1 402 CBL-interacting serine-threonine protein kinases family AT3G17510 68.317 0.0 557.0
Fli10000231.1g00001 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 62.335 0.0 585.0
Fli10001219.1g00002 . 217 288 CBL-interacting serine-threonine protein kinases family AT2G25090 37.179 4.81e-09 52.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fli Pkinase 9.6e-75 CL0016 PK Aur