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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro14g01235 ATGGCTTCCGAACCACTGAAACGAAACTGGTCAATTCACGATTTCGAGATCGGAAAACCCCTCGGAAAAGGGAAATTCGGTCGGGTCTATCTCGCCCGTGAAGCAAAGAGCAAGTATATAGTCGCATTGAAGGTGATATTCAAAGAGCAGATTGAAAAGTACAGGCTGCAGCACCAGTTGAAGAGAGAGATGGCGATTCAAACTAGCCTTCGACATCCGCATGTTCTCAGGCTGTACGGATGGTTTCATGATGCGGAGAGGATATTTTTGGTTTTGGAGTATGCTCATGGCGGTGAGCTGTACGGGGAGCTTCGGAGATCGGGTCATCTATCGGAGAAACAAGCTGCCACTTACATTGCTAGCCTTACCCAAGCATTAGCCTACTGTCATGAGAAGCATGTTATCCATCGGGATATCAAGCCAGAGAATTTGTTGCTTGATCACAAGGGTCGATTGAAGATAGCTGATTTCGGGTGGTCTGTGCAGTCAAAAAACAAGAGACACACGATGTGTGGAACATTAGACTATCTAGCACCAGAGATGGTGGAAAATAAAGCTCATGATTATGCAGTTGATAATTGGACTTTAGGTGTTTTATGTTATGAATTTCTATATGGTGTCCCTCCTTTTGAGGCAGACAGCCAAGCAGATACATTTCGAAGGATCATGAAGGTTGACCTCACCTTTCCTTCTACCCCTCATGTTTCTGATGAAGCTAAAGTTCTCATCACACAACTTTTGGTGAAAGACTCTGCAAAAAGACTCTCCCTTGAGAAGATATTGAAGCATCCTTGGATCATCATGAATGCTGACCCCAATGGTACTTTCTCTAAGTAG 837 44.32 MASEPLKRNWSIHDFEIGKPLGKGKFGRVYLAREAKSKYIVALKVIFKEQIEKYRLQHQLKREMAIQTSLRHPHVLRLYGWFHDAERIFLVLEYAHGGELYGELRRSGHLSEKQAATYIASLTQALAYCHEKHVIHRDIKPENLLLDHKGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGVLCYEFLYGVPPFEADSQADTFRRIMKVDLTFPSTPHVSDEAKVLITQLLVKDSAKRLSLEKILKHPWIIMNADPNGTFSK 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro14g01235 278 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524(InterPro)
Fro14g01235 278 FunFam Aurora kinase A 7 98 - -
Fro14g01235 278 ProSitePatterns Serine-Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Fro14g01235 278 CDD STKc-Aurora 14 266 - -
Fro14g01235 278 SMART serkin-6 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fro14g01235 278 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fro14g01235 278 Pfam Protein kinase domain 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fro14g01235 278 PIRSF ILK 4 269 - -
Fro14g01235 278 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 4 275 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Fro14g01235 278 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
Fro14g01235 278 Gene3D Transferase(Phosphotransferase) domain 1 98 275 - -
Fro14g01235 278 SUPERFAMILY Protein kinase-like (PK-like) 9 268 IPR011009 -
Fro14g01235 278 FunFam Serine-threonine-protein kinase ark1 7 278 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro14g01235 K08850 aurora kinase, other [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2522694 Fro Fro14g01235 Fro-Chr14:19860877 Fro2g00595 Fro-Chr2:5576812
2566659 Fro Fro14g01235 Fro-Chr14:19860877 Fro16g01139 Fro-Chr16:16437232
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fro2g00180 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 43.86 5.55e-71 226.0
Fro2g00595 WGDA 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.0 3.98e-55 182.0
Fro2g00800 . 19 277 CBL-interacting serine-threonine protein kinases family AT2G30360 38.577 1.72e-51 183.0
Fro2g01078 . 1 445 CBL-interacting serine-threonine protein kinases family AT5G35410 71.3 0.0 664.0
Fro2g01164 . 10 429 CBL-interacting serine-threonine protein kinases family AT5G01820 58.432 5.04e-160 457.0
Fro2g01562 . 8 297 CBL-interacting serine-threonine protein kinases family AT4G24400 40.864 1.20e-66 215.0
Fro4g00214 . 12 438 CBL-interacting serine-threonine protein kinases family AT4G30960 72.261 0.0 613.0
Fro5g00083 . 10 446 CBL-interacting serine-threonine protein kinases family AT1G01140 69.794 0.0 643.0
Fro6g00202 ACH 2 288 CBL-interacting serine-threonine protein kinases family AT2G25090 31.973 5.47e-45 160.0
Fro6g01238 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 42.034 7.42e-67 215.0
Fro7g00105 . 1 374 CBL-interacting serine-threonine protein kinases family AT4G14580 55.844 8.74e-142 409.0
Fro7g00284 . 42 301 CBL-interacting serine-threonine protein kinases family AT5G25110 44.689 1.17e-68 221.0
Fro8g00529 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.842 8.03e-56 184.0
Fro8g01136 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 4.30e-92 284.0
Fro8g01212 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 40.594 3.95e-69 223.0
Fro9g00300 . 15 439 CBL-interacting serine-threonine protein kinases family AT4G30960 74.707 0.0 624.0
Fro9g01103 . 8 265 CBL-interacting serine-threonine protein kinases family AT4G24400 43.866 7.90e-68 218.0
Fro9g01694 . 32 477 CBL-interacting serine-threonine protein kinases family AT5G25110 62.584 0.0 590.0
Fro9g01963 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 41.053 2.15e-66 214.0
Fro10g00592 . 3 425 CBL-interacting serine-threonine protein kinases family AT5G45820 68.08 0.0 620.0
Fro10g00635 ACH 11 281 CBL-interacting serine-threonine protein kinases family AT4G18700 26.91 1.73e-19 90.1
Fro11g00214 . 38 470 CBL-interacting serine-threonine protein kinases family AT5G25110 68.506 0.0 635.0
Fro11g01005 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 40.065 7.40e-68 218.0
Fro11g01744 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 1.25e-92 285.0
Fro11g02212 . 155 457 CBL-interacting serine-threonine protein kinases family AT1G30270 83.498 0.0 540.0
Fro11g02213 . 28 148 CBL-interacting serine-threonine protein kinases family AT1G30270 89.256 2.35e-75 230.0
Fro11g02888 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 57.65 0.0 542.0
Fro12g00465 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 83.953 0.0 769.0
Fro12g00521 . 16 455 CBL-interacting serine-threonine protein kinases family AT4G18700 74.773 0.0 679.0
Fro12g00522 . 2 410 CBL-interacting serine-threonine protein kinases family AT5G45820 59.502 0.0 536.0
Fro12g00879 ACH,WGDA 10 318 CBL-interacting serine-threonine protein kinases family AT5G58380 24.719 8.25e-13 68.2
Fro12g01291 . 16 441 CBL-interacting serine-threonine protein kinases family AT4G30960 73.364 0.0 615.0
Fro12g01949 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.279 4.63e-67 214.0
Fro12g02566 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.867 1.03e-68 221.0
Fro13g00481 . 13 447 CBL-interacting serine-threonine protein kinases family AT1G01140 74.713 0.0 695.0
Fro13g00641 . 15 473 CBL-interacting serine-threonine protein kinases family AT4G18700 69.957 0.0 664.0
Fro13g01216 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 58.741 3.92e-176 498.0
Fro13g01488 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G58380 52.242 6.42e-167 475.0
Fro13g01489 . 10 431 CBL-interacting serine-threonine protein kinases family AT5G01820 61.538 6.10e-178 503.0
Fro13g01518 . 1 472 CBL-interacting serine-threonine protein kinases family AT4G18700 77.59 0.0 749.0
Fro13g01565 . 13 298 CBL-interacting serine-threonine protein kinases family AT2G26980 39.739 3.44e-68 217.0
Fro14g00381 ACH 9 275 CBL-interacting serine-threonine protein kinases family AT2G26980 33.091 2.17e-45 159.0
Fro14g01202 . 1 421 CBL-interacting serine-threonine protein kinases family AT2G30360 56.541 4.04e-171 486.0
Fro14g01235 . 12 277 CBL-interacting serine-threonine protein kinases family AT5G10930 40.52 3.50e-63 203.0
Fro14g01585 . 15 422 CBL-interacting serine-threonine protein kinases family AT2G30360 62.836 0.0 520.0
Fro14g01589 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 61.894 0.0 584.0
Fro14g01859 . 12 284 CBL-interacting serine-threonine protein kinases family AT2G25090 30.657 3.80e-37 144.0
Fro15g00627 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 71.429 0.0 647.0
Fro15g00657 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 71.429 0.0 650.0
Fro16g00046 . 8 287 CBL-interacting serine-threonine protein kinases family AT4G24400 41.638 7.49e-64 207.0
Fro16g00714 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 53.15 5.13e-94 291.0
Fro16g00763 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 53.15 4.76e-94 291.0
Fro16g01139 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 66.667 0.0 602.0
Fro17g00458 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 59.535 0.0 511.0
Fro17g00459 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 69.845 0.0 643.0
Fro17g00774 . 6 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.529 5.39e-90 280.0
Fro17g00782 . 59 279 CBL-interacting serine-threonine protein kinases family AT2G25090 24.603 3.23e-08 55.1
Fro17g00810 . 1 445 CBL-interacting serine-threonine protein kinases family AT4G24400 80.089 0.0 753.0
Fro17g01166 . 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 27.974 2.49e-13 68.6
Fro18g00321 . 1 451 CBL-interacting serine-threonine protein kinases family AT5G58380 65.708 0.0 620.0
Fro18g00922 . 19 466 CBL-interacting serine-threonine protein kinases family AT5G25110 60.832 0.0 589.0
Fro10000250.1g00002 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.867 1.03e-68 221.0
Fro10000166.1g00017 . 42 301 CBL-interacting serine-threonine protein kinases family AT5G25110 44.689 1.17e-68 221.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fro Pkinase 5.1e-75 CL0016 PK Aur