AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02028 ATGCAGTCTTCATCATCTCCAGCACTATGTGCTGTCGTTCCTGTTGATTGCATCTTCAATTCTTCGAATCAGCTACCGTATCCTTCAAGTTTCAATTTGGGGTTATCCACAGGAAGTAGAAAGCTCAAGCTTTCTAGGTTGCAGGCTGGATTTTGGGAGTCTATTAGATCTGGGTTAATAAAGAACAACTCTACACAGGTTATTGAGCCATCTTCTAGTTCCCAAGAAGATGAAGAGCCTCTTCCAGAGGAATTTGTACTCGTCGAAAAAACGCTACCAGATGGAACAATTGAACAGATTATTTTTTCTTCAGGTGCAGAAGTCGATGTATATGATCTCCAAGCTTTATGTGATAAGGTTGGATGGCCGAGAAGACCACTATCAAAGCTAGCTGCTGCACTGAGAAATAGCTACATGGTAGCAACATTGCATTCCATAAAGAAAGCTGCTGGAGAAGAATTAACAGAACCGAATAATGAAAAGAAGCTCATTGGCATGGCTCGCGCCACCTCAGATCATGCATTCAATGCAACAATATGGGATGTCCTTGTAGATCCTAGCTACCAGGGGCAAGGTCTTGGAAAAGCTCTAATTGAGAAGCTTATAAGAGCTCTACTTCAGAGGGACATTGGCAACATATCACTATTTGCAGACAGTAAAGTTGTGGAATTTTATAGAAATCTAGGATTTGAACCCGACCCAGAGGGCATCAAAGGTATGTTCTGGTACCCTAGGTTTTAG 741 41.97 MQSSSSPALCAVVPVDCIFNSSNQLPYPSSFNLGLSTGSRKLKLSRLQAGFWESIRSGLIKNNSTQVIEPSSSSQEDEEPLPEEFVLVEKTLPDGTIEQIIFSSGAEVDVYDLQALCDKVGWPRRPLSKLAAALRNSYMVATLHSIKKAAGEELTEPNNEKKLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALIEKLIRALLQRDIGNISLFADSKVVEFYRNLGFEPDPEGIKGMFWYPRF 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02028 246 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 109 236 IPR016181 -
Fso1g02028 246 FunFam Putative acetyltransferase NSI 104 243 - -
Fso1g02028 246 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 100 246 IPR000182 GO:0016747(InterPro)
Fso1g02028 246 Gene3D - 104 243 - -
Fso1g02028 246 PANTHER ACYL-COA N-ACYLTRANSFERASE 10 244 IPR045039 GO:0005737(PANTHER)|GO:0008080(InterPro)|GO:0008080(PANTHER)
Fso1g02028 246 CDD NAT-SF 159 215 - -
Fso1g02028 246 Pfam Acetyltransferase (GNAT) family 159 230 IPR000182 GO:0016747(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02028 K22450 aralkylamine N-acetyltransferase [EC:2.3.1.87]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2587269 Fso Fso10g03143 Fso-Chr10:74439264 Fso1g02028 Fso-Chr1:59437879
2595351 Fso Fso14g00860 Fso-Chr14:10917673 Fso1g02028 Fso-Chr1:59437879
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fso Acetyltransf_1 1.7e-14 CL0257 TR GNAT