AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00262 ATGGCTTCCGAATCTCCCAAACAAAACTGGTCAATTAACGATTTCCAGATCGGTAAACCTCTCGGCAAAGGCAAGTTCGGCCGTGTCTACCTTGCACGCGAATCAAAGAGCAACTATATAGTGGCATTGAAAGTGATCTTCAAGGAGCAGATTGAAAAGTACCGGCTTCAGCATCAGTTAAAGAGAGAGATGGCCATTCAGACTAGTCTTCGCCATCCGCATGTTCTCAGGCTCTACGGTTGGTTTCATGATGCCGACAGGATATTTTTGATTTTGGAGTATGCTCATGGAGGCGAATTGTATGGAGAGCTTCGCAGATTGGGTCATCTGTCCGAGCAACAGGCTGCCACTTACATTGCTAGCCTTACACATGCATTAGCATACTGTCATGAGAAGCATGTTATACATCGGGATATCAAGCCAGAGAATTTGTTGCTTGATCACGAGGGTCGGTTGAAGATAGCTGATTTTGGGTGGTCTGTTCAGTCGAAAAACAAGAGACACACAATGTGTGGAACATTAGACTATCTCGCACCAGAGATGGTGGAAAATAAAGCTCATGATTATGCAGTTGATAATTGGACTTTAGGTGTTTTGTGTTATGAATTTCTCTATGGTGTCCCTCCTTTCGAAGCAGATAGCCAAGCAGATACATTTCGAAGAATTATGAAGGTTGACCTCACCTTTCCTTCTACCCCTCGTGTTTCTGATGAAGCTAAAGCTCTCATCACACAACTTTTAGTGAAAGACTCTGCAAAAAGGCTCCCCCTTGACAAGATTTTGAAGCATCCTTGGATCATCATGAATGCTGACCCCAATGGTACTTTCCCTAAATAG 837 43.73 MASESPKQNWSINDFQIGKPLGKGKFGRVYLARESKSNYIVALKVIFKEQIEKYRLQHQLKREMAIQTSLRHPHVLRLYGWFHDADRIFLILEYAHGGELYGELRRLGHLSEQQAATYIASLTHALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGVLCYEFLYGVPPFEADSQADTFRRIMKVDLTFPSTPRVSDEAKALITQLLVKDSAKRLPLDKILKHPWIIMNADPNGTFPK 278
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00262 278 CDD STKc-Aurora 14 266 - -
Amtr12g00262 278 FunFam Serine-threonine-protein kinase ark1 7 276 - -
Amtr12g00262 278 Gene3D Transferase(Phosphotransferase) domain 1 98 275 - -
Amtr12g00262 278 SUPERFAMILY Protein kinase-like (PK-like) 10 269 IPR011009 -
Amtr12g00262 278 SMART serkin-6 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Amtr12g00262 278 ProSitePatterns Serine-Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Amtr12g00262 278 Pfam Protein kinase domain 16 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Amtr12g00262 278 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 4 274 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Amtr12g00262 278 PIRSF ILK 2 269 - -
Amtr12g00262 278 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524(InterPro)
Amtr12g00262 278 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Amtr12g00262 278 FunFam Aurora kinase A 7 98 - -
Amtr12g00262 278 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00262 K08850 aurora kinase, other [EC:2.7.11.1]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
196740 Amtr Amtr02g03256 Amtr-Chr2:70060223 Amtr12g00262 Amtr-Chr12:7987071
225184 Amtr Amtr07g00510 Amtr-Chr7:6684373 Amtr12g00262 Amtr-Chr12:7987071
245958 Amtr Amtr12g00262 Amtr-Chr12:7987071 Amtr01g03749 Amtr-Chr1:98924851
271186 Amtr Amtr12g00262 Amtr-Chr12:7987071 Amtr06g06024 Amtr-Chr6:132740684
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g01649 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.465 6.96e-66 214.0
Amtr01g01844 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 3.01e-92 284.0
Amtr01g03749 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 70.507 0.0 638.0
Amtr01g03910 . 6 351 CBL-interacting serine-threonine protein kinases family AT2G26980 57.759 1.09e-134 414.0
Amtr01g04353 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 40.717 6.86e-69 221.0
Amtr01g05373 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 65.541 0.0 588.0
Amtr01g06245 . 6 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.14 5.46e-94 291.0
Amtr01g06839 . 87 162 CBL-interacting serine-threonine protein kinases family AT2G26980 57.692 2.00e-22 88.6
Amtr01g07053 . 8 313 CBL-interacting serine-threonine protein kinases family AT4G24400 39.688 1.96e-65 211.0
Amtr01g08826 . 89 133 CBL-interacting serine-threonine protein kinases family AT2G26980 57.778 4.48e-12 58.2
Amtr02g02047 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 43.015 1.01e-68 219.0
Amtr02g03545 . 232 439 CBL-interacting serine-threonine protein kinases family AT4G30960 60.476 4.94e-79 241.0
Amtr02g03546 . 7 198 CBL-interacting serine-threonine protein kinases family AT4G30960 79.688 2.14e-103 303.0
Amtr02g05320 . 12 284 CBL-interacting serine-threonine protein kinases family AT2G25090 31.387 1.49e-37 145.0
Amtr03g01273 . 16 438 CBL-interacting serine-threonine protein kinases family AT4G30960 76.235 0.0 635.0
Amtr03g02770 ACH,WGDA 6 271 CBL-interacting serine-threonine protein kinases family AT5G35410 34.307 1.38e-45 161.0
Amtr03g03274 . 8 265 CBL-interacting serine-threonine protein kinases family AT4G24400 43.123 6.00e-65 210.0
Amtr03g05790 . 38 474 CBL-interacting serine-threonine protein kinases family AT5G25110 68.565 0.0 643.0
Amtr03g07177 . 10 429 CBL-interacting serine-threonine protein kinases family AT5G01820 60.333 1.28e-172 489.0
Amtr04g00499 . 28 471 CBL-interacting serine-threonine protein kinases family AT1G30270 83.333 0.0 779.0
Amtr04g00593 . 15 455 CBL-interacting serine-threonine protein kinases family AT4G18700 72.172 0.0 657.0
Amtr04g00594 . 2 410 CBL-interacting serine-threonine protein kinases family AT5G45820 58.333 0.0 520.0
Amtr04g01290 . 19 279 CBL-interacting serine-threonine protein kinases family AT2G30360 36.803 2.77e-49 177.0
Amtr04g02208 . 19 441 CBL-interacting serine-threonine protein kinases family AT4G30960 73.176 0.0 611.0
Amtr04g06047 ACH,WGDA 6 263 CBL-interacting serine-threonine protein kinases family AT5G35410 34.586 2.52e-46 164.0
Amtr05g00739 . 1 425 CBL-interacting serine-threonine protein kinases family AT5G45820 60.187 0.0 535.0
Amtr05g01395 . 21 489 CBL-interacting serine-threonine protein kinases family AT4G18700 74.255 0.0 707.0
Amtr05g01507 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.279 1.40e-67 215.0
Amtr05g03161 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 1.20e-92 285.0
Amtr05g04606 ACH 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 27.778 6.38e-14 70.5
Amtr05g05295 . 1 445 CBL-interacting serine-threonine protein kinases family AT4G24400 79.195 0.0 741.0
Amtr05g05959 . 1 119 CBL-interacting serine-threonine protein kinases family AT1G01140 46.218 9.80e-28 103.0
Amtr05g06382 . 10 446 CBL-interacting serine-threonine protein kinases family AT1G01140 69.336 0.0 639.0
Amtr06g00125 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.544 1.46e-66 213.0
Amtr06g00474 . 62 275 CBL-interacting serine-threonine protein kinases family AT1G01140 23.695 3.78e-10 61.2
Amtr06g00487 . 6 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.14 6.31e-91 282.0
Amtr06g01232 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 57.604 5.83e-173 489.0
Amtr06g01975 . 1 445 CBL-interacting serine-threonine protein kinases family AT5G35410 71.812 0.0 672.0
Amtr06g02332 . 19 279 CBL-interacting serine-threonine protein kinases family AT2G30360 38.29 8.64e-54 189.0
Amtr06g02811 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 43.509 8.88e-71 225.0
Amtr06g02880 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.073 8.95e-67 216.0
Amtr06g04643 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.647 3.02e-66 212.0
Amtr06g04737 . 70 145 CBL-interacting serine-threonine protein kinases family AT2G25090 38.462 2.29e-14 64.3
Amtr06g05014 . 17 421 CBL-interacting serine-threonine protein kinases family AT2G30360 57.039 3.67e-158 452.0
Amtr06g05899 . 55 77 CBL-interacting serine-threonine protein kinases family AT1G48260 82.609 4.43e-08 45.8
Amtr06g06024 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.125 1.37e-54 181.0
Amtr07g00510 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.484 3.29e-55 183.0
Amtr07g02033 . 1 437 CBL-interacting serine-threonine protein kinases family AT5G10930 61.818 0.0 572.0
Amtr07g02326 . 14 425 CBL-interacting serine-threonine protein kinases family AT4G14580 56.039 2.58e-154 442.0
Amtr07g02616 . 11 275 CBL-interacting serine-threonine protein kinases family AT5G10930 44.245 6.83e-69 220.0
Amtr07g04191 . 1 451 CBL-interacting serine-threonine protein kinases family AT5G58380 61.283 0.0 582.0
Amtr07g05300 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 40.264 1.58e-69 223.0
Amtr07g05940 . 5 428 CBL-interacting serine-threonine protein kinases family AT5G01820 58.661 6.68e-166 472.0
Amtr07g05948 . 1 443 CBL-interacting serine-threonine protein kinases family AT5G58380 52.584 6.32e-166 472.0
Amtr08g00431 . 5 439 CBL-interacting serine-threonine protein kinases family AT5G10930 63.333 0.0 590.0
Amtr08g01489 . 17 86 CBL-interacting serine-threonine protein kinases family AT3G17510 41.429 4.29e-16 69.3
Amtr08g01968 . 1 452 CBL-interacting serine-threonine protein kinases family AT5G58380 66.667 0.0 625.0
Amtr08g03758 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 2.23e-92 284.0
Amtr08g04164 . 16 52 CBL-interacting serine-threonine protein kinases family AT4G14580 51.351 4.16e-08 45.4
Amtr08g04882 . 28 466 CBL-interacting serine-threonine protein kinases family AT1G30270 83.827 0.0 773.0
Amtr09g00763 ACH 6 263 CBL-interacting serine-threonine protein kinases family AT5G35410 33.835 9.61e-46 162.0
Amtr09g02410 . 8 280 CBL-interacting serine-threonine protein kinases family AT4G24400 43.86 7.02e-71 225.0
Amtr10g01295 . 15 466 CBL-interacting serine-threonine protein kinases family AT4G18700 73.465 0.0 683.0
Amtr10g01296 . 3 425 CBL-interacting serine-threonine protein kinases family AT5G45820 67.483 0.0 608.0
Amtr10g01304 . 55 77 CBL-interacting serine-threonine protein kinases family AT1G48260 82.609 4.43e-08 45.8
Amtr10g03686 . 9 462 CBL-interacting serine-threonine protein kinases family AT4G18700 74.725 0.0 699.0
Amtr10g04857 . 13 447 CBL-interacting serine-threonine protein kinases family AT1G01140 74.253 0.0 692.0
Amtr11g00188 . 1 328 CBL-interacting serine-threonine protein kinases family AT5G01810 63.526 1.99e-157 445.0
Amtr11g00189 . 368 450 CBL-interacting serine-threonine protein kinases family AT5G58380 40.698 9.33e-14 62.8
Amtr11g01251 . 20 285 CBL-interacting serine-threonine protein kinases family AT2G30360 42.086 2.02e-65 211.0
Amtr11g02446 . 13 438 CBL-interacting serine-threonine protein kinases family AT4G30960 72.748 0.0 615.0
Amtr12g00137 . 1 420 CBL-interacting serine-threonine protein kinases family AT5G45820 59.479 1.54e-180 508.0
Amtr12g00168 . 18 419 CBL-interacting serine-threonine protein kinases family AT5G01820 62.836 4.08e-174 493.0
Amtr12g00262 . 12 277 CBL-interacting serine-threonine protein kinases family AT5G10930 39.405 9.77e-62 199.0
Amtr12g01200 . 15 422 CBL-interacting serine-threonine protein kinases family AT2G30360 62.287 0.0 525.0
Amtr12g01205 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 61.758 0.0 585.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Amtr Pkinase 3.6e-73 CL0016 PK Aur