AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00034 ATGCAGACCTCCTCCTCCTCCTCTTCATCGCCTCCTGCACTATGCGCCATCGTTCCTGTAGATTGCGTCTCAAATCAGCTACCGTTTCCTTCCAATTTCACTTTACGCTTATCCACAGGTCCATTCTCATGTGTATTCTCTAAATTAAATATCCTATTATTCGAATTTCCCTACGAATTAATTAGGGCTATTCGATTAATCCTAGGGTCATTTGATTATAATGTGCATATTTTTACAGGAGGGAGCAGAAAGCTCAAGGTTTCTAGGTTGCAGGCCGGATTTTGGGAATCCATTAGGTCCGGGTTAATAAAGAACAACTCTACACAGGTTATAGAGCCAACATCTAGTTCCCAAGAAGATGAAGAACCTCTTCCAGAAGAATTTGTACTTGTCGAAAATACGCTACCAGATGGAACAATTGAACAAATTATTTTTTCTTCAGGTGCAGAAGTTGATGTATATGATCTCCAAGCCTTGTGCGATAAGGTTGGGTGGCCCAGAAGACCACTATCAAAGCTAGCTGCTGCACTGAGAAATAGCTACATGGCAGCAACGTTGCATTCCGTAAAGAAACCAGCTGGTCCAGCTGGAGAAGAATTAACAGAACCCAATAATGAAAAGAAGCTCATTGGCATGGCTCGTGCCACATCAGATCATGCATTCAATGCGACAATATGGGACGTCCTTGTAGATCCTAGCTACCAGGGACAAGGTCTTGGAAAAGCGCTAATTGAGAAGCTTATAAGAGCTCTACTTCAGAGGGACATTGGCAACATATCACTATTTGCAGACAGTAAAGTTGTGGAATTTTATAGGAATCTAGGATTTGAACCCGACCCAGAGGGCATCAAGGGTATGTTTTGGTACCCTAGGTTTTAG 879 42.55 MQTSSSSSSSPPALCAIVPVDCVSNQLPFPSNFTLRLSTGPFSCVFSKLNILLFEFPYELIRAIRLILGSFDYNVHIFTGGSRKLKVSRLQAGFWESIRSGLIKNNSTQVIEPTSSSQEDEEPLPEEFVLVENTLPDGTIEQIIFSSGAEVDVYDLQALCDKVGWPRRPLSKLAAALRNSYMAATLHSVKKPAGPAGEELTEPNNEKKLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALIEKLIRALLQRDIGNISLFADSKVVEFYRNLGFEPDPEGIKGMFWYPRF 292
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00034 292 FunFam Putative acetyltransferase NSI 147 289 - -
Hetu2g00034 292 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 143 292 IPR000182 GO:0016747(InterPro)
Hetu2g00034 292 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 152 282 IPR016181 -
Hetu2g00034 292 PANTHER ACYL-COA N-ACYLTRANSFERASE 81 290 IPR045039 GO:0005737(PANTHER)|GO:0008080(PANTHER)|GO:0008080(InterPro)
Hetu2g00034 292 Pfam Acetyltransferase (GNAT) family 205 276 IPR000182 GO:0016747(InterPro)
Hetu2g00034 292 Gene3D - 147 289 - -
Hetu2g00034 292 CDD NAT-SF 205 261 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00034 K22450 aralkylamine N-acetyltransferase [EC:2.3.1.87]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3322967 Hetu Hetu1g00032 Hetu-Chr1:1481667 Hetu2g00034 Hetu-Chr2:1086773
3341062 Hetu Hetu25g00981 Hetu-Chr25:38181003 Hetu2g00034 Hetu-Chr2:1086773
3344425 Hetu Hetu26g01141 Hetu-Chr26:40771368 Hetu2g00034 Hetu-Chr2:1086773
3529083 Hetu Hetu1g00044 Hetu-Chr1:2127158 Hetu2g00034 Hetu-Chr2:1086773
3578605 Hetu Hetu2g00034 Hetu-Chr2:1086773 Hetu2g00108 Hetu-Chr2:3592561
3580303 Hetu Hetu2g00034 Hetu-Chr2:1086773 Hetu3g00051 Hetu-Chr3:2609331
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hetu Acetyltransf_1 5.3e-14 CL0257 TR GNAT