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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g02538 ATGGGACTTTGCTTCTCTTCGACTACGGCGGATGAAGCACCTGCCAATCATCCTCATTTTACGGGAGGTAAAGTCACCTTCATCACTAACAAGGATGTTTGGAACCAAAAGCTCTCAGAAGCAAAGACTCAAGGCAAAATAGTTATTGCTAACTTTAGTGCATCTTGGTGTGGTCCATGCAAATCAATTGCACCATTATACATTGAGCTTTCCGAGAAGCATCTTTCTCTTATGTTTCTGACCATAGACGTTGATGAATTAACGGAGTTAAGCACACAATGGGATGTAAAAGCTACTCCAACATTCTTCTTCCTTAGAGATGGGCAGCAAATTGATAAAATCGTGGGAGCCAACAAGGCTGAGCTGCAGGAAAAATTATCCACCATAGTCGATTCACAAGTCCCAGGTGATCAAAAGTAA 420 41.9 MGLCFSSTTADEAPANHPHFTGGKVTFITNKDVWNQKLSEAKTQGKIVIANFSASWCGPCKSIAPLYIELSEKHLSLMFLTIDVDELTELSTQWDVKATPTFFFLRDGQQIDKIVGANKAELQEKLSTIVDSQVPGDQK 139
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g02538 139 ProSitePatterns Thioredoxin family active site. 49 67 IPR017937 -
Hean11g02538 139 PRINTS Thioredoxin family signature 48 56 - -
Hean11g02538 139 PRINTS Thioredoxin family signature 56 65 - -
Hean11g02538 139 PRINTS Thioredoxin family signature 95 106 - -
Hean11g02538 139 SUPERFAMILY Thioredoxin-like 21 129 IPR036249 -
Hean11g02538 139 ProSiteProfiles Thioredoxin domain profile. 7 131 IPR013766 -
Hean11g02538 139 PANTHER THIOREDOXIN 23 127 IPR050620 -
Hean11g02538 139 Pfam Thioredoxin 27 126 IPR013766 -
Hean11g02538 139 CDD TRX-family 38 126 - -
Hean11g02538 139 Gene3D Glutaredoxin 3 137 - -
Hean11g02538 139 FunFam Thioredoxin 22 131 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g02538 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
402271 Hean11g02538 Hean1g00030
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3207528 Hean Hean11g02538 Hean-Chr11:113840287 Hean1g00030 Hean-Chr1:1028530
3262008 Hean Hean11g02538 Hean-Chr11:113840287 Hean16g04509 Hean-Chr16:198701468