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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02714 ATGGGACTTTGCTTCTCTTCGACTACGGCTGATGAAGAACCTGCGAATCATCCTCAGTTTTCGGGAGGTAAGGTCACCTTCATTACTACCAAGGATGCTTGGAACCAAAAGCTCTCAGAAGCAAAGAGTCAAGGCAAAATAGTGATTGCTAACTTTAGTGCATCTTGGTGTGGTCCCTGCAAATCGATTTCCCCATTATACATTGAGCTTTCTGAGAAGCATCCTTCTCTTATGTTTTTGACCTTAGACGTTGATGAATTAACGGAGTTAAGCACACAATGGGATGTAAAAGCAACTCCAACGTTCTTCTTCCTTCGAGATGGGCAACAAATCGATAAAGTCGTGGGCGCCAACAAGCCCGAACTGCAGGAAAAGATAACCGCCATAGTCAATTCAAAAGTCCCAGGTGATCAAAAGTAA 420 43.57 MGLCFSSTTADEEPANHPQFSGGKVTFITTKDAWNQKLSEAKSQGKIVIANFSASWCGPCKSISPLYIELSEKHPSLMFLTLDVDELTELSTQWDVKATPTFFFLRDGQQIDKVVGANKPELQEKITAIVNSKVPGDQK 139
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02714 139 ProSitePatterns Thioredoxin family active site. 49 67 IPR017937 -
Bial12g02714 139 Gene3D Glutaredoxin 3 137 - -
Bial12g02714 139 PRINTS Thioredoxin family signature 48 56 - -
Bial12g02714 139 PRINTS Thioredoxin family signature 95 106 - -
Bial12g02714 139 PRINTS Thioredoxin family signature 56 65 - -
Bial12g02714 139 ProSiteProfiles Thioredoxin domain profile. 7 131 IPR013766 -
Bial12g02714 139 SUPERFAMILY Thioredoxin-like 20 131 IPR036249 -
Bial12g02714 139 PANTHER THIOREDOXIN 23 128 IPR050620 -
Bial12g02714 139 FunFam Thioredoxin 21 131 - -
Bial12g02714 139 Pfam Thioredoxin 27 127 IPR013766 -
Bial12g02714 139 CDD TRX-family 38 126 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02714 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
361529 Bial10g01262 Bial12g02714
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
677935 Bial Bial12g02714 Bial-Chr12:57345554 Bial16g01949 Bial-Chr16:46328609
777557 Bial Bial10g01262 Bial-Chr10:12635105 Bial12g02714 Bial-Chr12:57345554