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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00030 ATGGGGCATTGCTTCTCTTCGCCTCGGGCTGATGAAGACGAGACCAACAGTCATGCTCAGCTTGCGGGAGGTAACGTGACTCTCATCACTACCAAGAACGCTTGGGATCAAAAACTGGCAGAAGCAAAGACTCAAGGCAAAATAGTGATTGGCAACTTCAGTGCAACTTGGTGTGGTCCATGCAAATCAATGGCACCTTACTACATTGAGCTATCAGAGAAGTATCCTTCTCTTATGTTTCTGACCGTAGACGTTGACGAATTAACGGATTTTAGCACACAACTGGATGTAAAAGCTACTCCAACATTCTTCTTCTTTAAAGATGGTCAACAAATTGATAAACTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCGCCATTGTTGATTCACAAGCAACCATAAATCCATAA 420 43.33 MGHCFSSPRADEDETNSHAQLAGGNVTLITTKNAWDQKLAEAKTQGKIVIGNFSATWCGPCKSMAPYYIELSEKYPSLMFLTVDVDELTDFSTQLDVKATPTFFFFKDGQQIDKLVGANKPELQKKITAIVDSQATINP 139
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00030 139 PANTHER THIOREDOXIN 24 129 IPR050620 -
Hean1g00030 139 SUPERFAMILY Thioredoxin-like 21 132 IPR036249 -
Hean1g00030 139 FunFam Thioredoxin 23 132 - -
Hean1g00030 139 CDD TRX-family 39 127 - -
Hean1g00030 139 Gene3D Glutaredoxin 1 138 - -
Hean1g00030 139 ProSiteProfiles Thioredoxin domain profile. 20 132 IPR013766 -
Hean1g00030 139 PRINTS Thioredoxin family signature 49 57 - -
Hean1g00030 139 PRINTS Thioredoxin family signature 96 107 - -
Hean1g00030 139 PRINTS Thioredoxin family signature 57 66 - -
Hean1g00030 139 Pfam Thioredoxin 27 128 IPR013766 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00030 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
402271 Hean11g02538 Hean1g00030
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3207528 Hean Hean11g02538 Hean-Chr11:113840287 Hean1g00030 Hean-Chr1:1028530
3222517 Hean Hean16g00429 Hean-Chr16:9577018 Hean1g00030 Hean-Chr1:1028530
3223488 Hean Hean16g01756 Hean-Chr16:77385107 Hean1g00030 Hean-Chr1:1028530
3223715 Hean Hean16g02080 Hean-Chr16:106731102 Hean1g00030 Hean-Chr1:1028530
3228941 Hean Hean1g00030 Hean-Chr1:1028530 Hean9g03873 Hean-Chr9:171291070
3269436 Hean Hean1g00030 Hean-Chr1:1028530 Hean16g04509 Hean-Chr16:198701468