AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cobi2g02220 | ATGGTTTTCTCTCAATTAACCGCTTTGATGGAAGACAAAACATGCAAACCGTCCAACAACTATTTACACCTTCCTTTGAACCCTCCTGATGCCACGTCAGATAGCATCGAACTCGACTTTTCTGATACTTTTGGTCCTCTGCCAGCTCACGGATCTTCTGAAATTTCAAACGAAACTGTGTATGACGACCCGGTGGTCATCTGCAACCGGTCACATTCTTTGGTGGGCCCCACGCCACGTGTCAGTCACTTGCTAAATCTAAAGAAGCTGACCATATGTGAAGCAGAGGAGTTAGAGGATTTTAATGACGTGGCGGTTGAAGGACTTGAGGAAAACTGTGAGAAGGCACGTTGTGTTGGGATTGAGGATTTCGAGGTTATGAAAGTTGTGGGCCAAGGTGCGTTCGGGAAAGTGTATCAAGTTAGAAAGAAGGATAGTTTGGAAATATACGCAATGAAGGTTGTGAGGAAAGATAAGATTGTGGAGAAGAATCATGCTGAGTATATGAAAGCTGAGAGGGATATTTTGACCAAGATTGACCATCCTTTTATAGTCCAGCTCAGATATTCTTTCCAGACAAAATATAGGCTTTATCTGGTTTTGGACTTTGTGAATGGAGGGCATCTGTTTTTCCAGCTCTATCACCACGGGCTGTTTCGAGAGGATCTGGCCCGTATTTATACTGCAGAGATGGTTTCAGCTGTTTCTCACCTTCATGCAAATGGCATAATGCATAGGGATCTCAAGCCAGAAAATATTCTTCTTGATGTGGATGGCCATGCTTTGCTTACCGACTTTGGGTTAGCAAAAGAATTTGATGAAAATGCAAGATCGAACTCGTTATGTGGGACCGTAGAATACATGTCACCTGAAATTATTCTTGGTAAGGGACATGATAAGGCTGCTGATTGGTGGAGTGTTGGAATCTTGTTGTTTGAAATGCTCACAGGACAGCCACCGTTTCGTGGCGGTAACCGAGAGAAAATACAAAAAAAGATTGTGAAGGATAAACTAAAGCTACCTGCATATTTAACAAGCGAAGCACACTGCTTACTAAAAGAGTTACTGCAAAAAGATCCAAGCAAGAGGCTTGGAAACGGGCCGAGGGGAAGTGATGAGATAAAACATCACAAGTGGTTCAAGTCCATTAACTGGAAAAAGTTAGATGCACGTGAAATCCAGCCTAGTTTTAGGCCTGAAGTTGCAGGAATCCAGTGCATTGCTAATTTTGATAAAAAGTGGACGGATATGCCCCTGTTGGACTCCCCTGCATCCAGCCCAGATGCTTCTGCTAATCTTTTTCAGGGGTTTACTTATGTTAAGCCAGCGGCCTCGTTTCTCAGGAGAAACAGCCCAGTCTGCTAA | 1365 | 43.52 | MVFSQLTALMEDKTCKPSNNYLHLPLNPPDATSDSIELDFSDTFGPLPAHGSSEISNETVYDDPVVICNRSHSLVGPTPRVSHLLNLKKLTICEAEELEDFNDVAVEGLEENCEKARCVGIEDFEVMKVVGQGAFGKVYQVRKKDSLEIYAMKVVRKDKIVEKNHAEYMKAERDILTKIDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYTAEMVSAVSHLHANGIMHRDLKPENILLDVDGHALLTDFGLAKEFDENARSNSLCGTVEYMSPEIILGKGHDKAADWWSVGILLFEMLTGQPPFRGGNREKIQKKIVKDKLKLPAYLTSEAHCLLKELLQKDPSKRLGNGPRGSDEIKHHKWFKSINWKKLDAREIQPSFRPEVAGIQCIANFDKKWTDMPLLDSPASSPDASANLFQGFTYVKPAASFLRRNSPVC | 454 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cobi2g02220 | 454 | FunFam | Non-specific serine-threonine protein kinase | 204 | 399 | - | - | |
| Cobi2g02220 | 454 | CDD | STKc-AGC | 130 | 380 | IPR045270 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
| Cobi2g02220 | 454 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 381 | 449 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cobi2g02220 | 454 | SUPERFAMILY | Protein kinase-like (PK-like) | 121 | 443 | IPR011009 | - | |
| Cobi2g02220 | 454 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 100 | 445 | - | - | |
| Cobi2g02220 | 454 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 243 | 255 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cobi2g02220 | 454 | Gene3D | Phosphorylase Kinase; domain 1 | 121 | 422 | - | - | |
| Cobi2g02220 | 454 | ProSitePatterns | Protein kinases ATP-binding region signature. | 130 | 157 | IPR017441 | GO:0005524(InterPro) | |
| Cobi2g02220 | 454 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 399 | - | - | |
| Cobi2g02220 | 454 | Pfam | Protein kinase C terminal domain | 403 | 439 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cobi2g02220 | 454 | SMART | pkinase-C-6 | 381 | 441 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cobi2g02220 | 454 | Pfam | Protein kinase domain | 124 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cobi2g02220 | 454 | SMART | serkin-6 | 124 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cobi2g02220 | 454 | FunFam | Non-specific serine-threonine protein kinase | 121 | 225 | - | - | |
| Cobi2g02220 | 454 | ProSiteProfiles | Protein kinase domain profile. | 124 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cobi2g02220 | K04688 | ribosomal protein S6 kinase beta [EC:2.7.11.1] |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 1787654 | Cobi | Cobi12g00490 | Cobi-Chr12:4322444 | Cobi2g02220 | Cobi-Chr2:68510183 | |
| 1787750 | Cobi | Cobi12g00619 | Cobi-Chr12:5229465 | Cobi2g02220 | Cobi-Chr2:68510183 | |
| 1792811 | Cobi | Cobi1g04292 | Cobi-Chr1:90043637 | Cobi2g02220 | Cobi-Chr2:68510183 | |
| 1795174 | Cobi | Cobi2g02220 | Cobi-Chr2:68510183 | Cobi6g02066 | Cobi-Chr6:16717420 | |
| 1801961 | Cobi | Cobi5g00429 | Cobi-Chr5:4748065 | Cobi2g02220 | Cobi-Chr2:68510183 | |
| 1812576 | Cobi | Cobi2g02220 | Cobi-Chr2:68510183 | Cobi2g02228 | Cobi-Chr2:68639296 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cobi1g02936 | . | 113 | 1291 | AGC Kinase gene family | AT3G17850 | 65.359 | 0.0 | 1484.0 | |
| Cobi1g04292 | . | 38 | 445 | AGC Kinase gene family | AT3G08720 | 58.67 | 2.52e-170 | 498.0 | |
| Cobi1g04554 | . | 1 | 504 | AGC Kinase gene family | AT5G09890 | 76.19 | 0.0 | 811.0 | |
| Cobi2g02749 | . | 358 | 991 | AGC Kinase gene family | AT1G45160 | 58.009 | 0.0 | 743.0 | |
| Cobi2g02564 | . | 135 | 409 | AGC Kinase gene family | AT3G08720 | 37.545 | 3.98e-48 | 177.0 | |
| Cobi2g02220 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 67.872 | 0.0 | 648.0 | |
| Cobi1g00692 | . | 135 | 259 | AGC Kinase gene family | AT5G58140 | 40.299 | 4.70e-21 | 96.3 | |
| Cobi11g00077 | . | 133 | 1168 | AGC Kinase gene family | AT5G62310 | 49.448 | 0.0 | 920.0 | |
| Cobi11g00373 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 58.901 | 4.37e-157 | 450.0 | |
| Cobi11g00572 | . | 19 | 391 | AGC Kinase gene family | AT1G51170 | 57.641 | 5.86e-145 | 414.0 | |
| Cobi11g00650 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 66.075 | 0.0 | 555.0 | |
| Cobi11g00663 | . | 103 | 586 | AGC Kinase gene family | AT5G47750 | 65.714 | 0.0 | 635.0 | |
| Cobi11g00735 | . | 84 | 499 | AGC Kinase gene family | AT5G40030 | 75.349 | 0.0 | 668.0 | |
| Cobi11g01354 | . | 1 | 149 | AGC Kinase gene family | AT1G03920 | 55.263 | 6.92e-43 | 152.0 | |
| Cobi11g02571 | . | 1 | 473 | AGC Kinase gene family | AT3G14370 | 60.404 | 0.0 | 521.0 | |
| Cobi6g02241 | . | 1 | 504 | AGC Kinase gene family | AT5G09890 | 76.331 | 0.0 | 814.0 | |
| Cobi6g02066 | . | 23 | 461 | AGC Kinase gene family | AT3G08720 | 57.965 | 1.15e-179 | 509.0 | |
| Cobi10g00280 | . | 120 | 765 | AGC Kinase gene family | AT2G44830 | 67.231 | 0.0 | 831.0 | |
| Cobi4g00815 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 78.227 | 0.0 | 842.0 | |
| Cobi4g00916 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 58.432 | 1.39e-162 | 461.0 | |
| Cobi5g00833 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 65.652 | 0.0 | 562.0 | |
| Cobi5g01150 | . | 90 | 586 | AGC Kinase gene family | AT5G47750 | 81.474 | 0.0 | 823.0 | |
| Cobi2g00060 | . | 4 | 491 | AGC Kinase gene family | AT5G04510 | 74.338 | 0.0 | 752.0 | |
| Cobi10g01170 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 53.14 | 2.06e-139 | 401.0 | |
| Cobi2g01286 | . | 30 | 1159 | AGC Kinase gene family | AT5G62310 | 57.594 | 0.0 | 1240.0 | |
| Cobi12g01519 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 82.004 | 0.0 | 905.0 | |
| Cobi12g01429 | . | 68 | 765 | AGC Kinase gene family | AT2G44830 | 64.494 | 0.0 | 850.0 | |
| Cobi12g01015 | ACH,WGDA | 119 | 346 | AGC Kinase gene family | AT3G08730 | 24.111 | 3.33e-08 | 54.7 | |
| Cobi12g00968 | . | 4 | 451 | AGC Kinase gene family | AT3G44610 | 63.436 | 0.0 | 543.0 | |
| Cobi12g00894 | . | 17 | 404 | AGC Kinase gene family | AT1G51170 | 56.061 | 4.84e-150 | 428.0 | |
| Cobi12g00619 | . | 1 | 458 | AGC Kinase gene family | AT3G08720 | 66.379 | 0.0 | 622.0 | |
| Cobi12g00490 | . | 2 | 479 | AGC Kinase gene family | AT3G10540 | 73.251 | 0.0 | 739.0 | |
| Cobi6g00177 | . | 8 | 996 | AGC Kinase gene family | AT3G45780 | 67.213 | 0.0 | 1324.0 | |
| Cobi6g00421 | . | 1 | 925 | AGC Kinase gene family | AT3G52890 | 45.151 | 0.0 | 686.0 | |
| Cobi10g02760 | . | 381 | 934 | AGC Kinase gene family | AT3G52890 | 61.871 | 0.0 | 667.0 | |
| Cobi10g02518 | ACH | 119 | 346 | AGC Kinase gene family | AT3G08730 | 22.925 | 9.39e-08 | 53.1 | |
| Cobi3g03550 | . | 5 | 525 | AGC Kinase gene family | AT2G26700 | 57.974 | 0.0 | 577.0 | |
| Cobi3g02921 | . | 94 | 1288 | AGC Kinase gene family | AT3G17850 | 65.947 | 0.0 | 1516.0 | |
| Cobi3g02725 | . | 120 | 586 | AGC Kinase gene family | AT5G47750 | 77.755 | 0.0 | 757.0 | |
| Cobi3g02316 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 1.44e-22 | 100.0 | |
| Cobi3g02242 | . | 82 | 578 | AGC Kinase gene family | AT3G27580 | 68.379 | 0.0 | 662.0 | |
| Cobi3g00064 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.013 | 1.28e-09 | 60.5 | |
| Cobi9g00052 | . | 1 | 996 | AGC Kinase gene family | AT3G45780 | 68.593 | 0.0 | 1360.0 | |
| Cobi2g03209 | . | 17 | 404 | AGC Kinase gene family | AT1G51170 | 54.592 | 3.35e-140 | 403.0 | |
| Cobi2g03765 | . | 121 | 586 | AGC Kinase gene family | AT5G47750 | 79.202 | 0.0 | 762.0 | |
| Cobi7g02211 | . | 157 | 414 | AGC Kinase gene family | AT2G34650 | 66.923 | 1.67e-120 | 350.0 | |
| Cobi7g01919 | . | 11 | 525 | AGC Kinase gene family | AT2G26700 | 58.476 | 0.0 | 570.0 | |
| Cobi7g01681 | . | 1 | 518 | AGC Kinase gene family | AT4G33080 | 77.351 | 0.0 | 829.0 | |
| Cobi7g00841 | . | 10 | 360 | AGC Kinase gene family | AT4G13000 | 57.465 | 7.06e-143 | 408.0 | |
| Cobi7g00752 | . | 44 | 519 | AGC Kinase gene family | AT2G20470 | 79.455 | 0.0 | 807.0 | |
| Cobi7g00751 | . | 39 | 519 | AGC Kinase gene family | AT2G20470 | 81.649 | 0.0 | 835.0 | |
| Cobi12g02526 | . | 135 | 233 | AGC Kinase gene family | AT5G58140 | 45.37 | 1.09e-21 | 98.6 | |
| Cobi1g00172 | . | 1 | 544 | AGC Kinase gene family | AT3G23310 | 81.284 | 0.0 | 907.0 | |
| Cobi7g00095 | . | 47 | 912 | AGC Kinase gene family | AT5G58140 | 71.687 | 0.0 | 1270.0 | |
| Cobi7g00187 | . | 129 | 325 | AGC Kinase gene family | AT3G08730 | 23.043 | 4.40e-07 | 50.4 | |
| Cobi4g00410 | . | 19 | 438 | AGC Kinase gene family | AT2G34650 | 61.369 | 0.0 | 535.0 | |
| Cobi4g03140 | . | 1 | 449 | AGC Kinase gene family | AT3G14370 | 60.262 | 5.32e-179 | 507.0 | |
| Cobi4g02663 | . | 124 | 586 | AGC Kinase gene family | AT5G47750 | 75.106 | 0.0 | 717.0 | |
| Cobi6g02749 | . | 119 | 555 | AGC Kinase gene family | AT1G79250 | 72.235 | 0.0 | 653.0 | |
| Cobi8g01222 | . | 117 | 234 | AGC Kinase gene family | AT5G58140 | 38.806 | 6.18e-22 | 99.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cobi | Pkinase | 1.2e-74 | CL0016 | PK | AGC-Pl |