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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04255 ATGAGTTGTCAAAAGAGATATAACTTTTATGAAGTTTTCACACGGGGGACTTCTCAAAACCAAACCAATATTTATACGAATTACGAAGAAAAGGAGCAATTGGTTTCAATCGTCGTCGGAAACCTCAAATTTCAGGGTAAACCCACTTCATTTGTTTTAAACATTCAAATGGGACTTTGCTTCTCATCGGTTCCGGCTGATGAAGATGTATCCGATAGTCATCATCAGTTTGCGGGAGGTAACGTGACTCTGATCACCACCAAGAACGTTTGGGACCAAACGCTGTCTGAAGCAAAGAATCAAGGAAAAGTATTAATTGCCAATTTTAGTGCCTCATGGTGTGGTCCATGCAAATCAATTGCGTCTTACTACATTGAGCTATCGGAGAAATATCCATCTCTTATGTTTGTGACGATAGATGTTGATGAATTAACGGATTTTAGCACACAAATGGAAATAAACGTGACTCCCACATTCTTCTTCTTTAAAGACGGTAAACAAATTGATAAACTTGTTGGAGCCAACAAACCTGAATTGCAGAAAAAGATAACCACCATTGTTGATTCACAAGCACCCACGGCTCACATGTAA 591 38.92 MSCQKRYNFYEVFTRGTSQNQTNIYTNYEEKEQLVSIVVGNLKFQGKPTSFVLNIQMGLCFSSVPADEDVSDSHHQFAGGNVTLITTKNVWDQTLSEAKNQGKVLIANFSASWCGPCKSIASYYIELSEKYPSLMFVTIDVDELTDFSTQMEINVTPTFFFFKDGKQIDKLVGANKPELQKKITTIVDSQAPTAHM 196
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04255 196 Gene3D Glutaredoxin 57 194 - -
Stre1g04255 196 ProSitePatterns Thioredoxin family active site. 106 124 IPR017937 -
Stre1g04255 196 Pfam Thioredoxin 84 184 IPR013766 -
Stre1g04255 196 SUPERFAMILY Thioredoxin-like 78 187 IPR036249 -
Stre1g04255 196 FunFam Thioredoxin 79 188 - -
Stre1g04255 196 ProSiteProfiles Thioredoxin domain profile. 55 188 IPR013766 -
Stre1g04255 196 CDD TRX-family 93 183 - -
Stre1g04255 196 PANTHER THIOREDOXIN 80 185 IPR050620 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04255 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
159134 Stre1g04255 Stre6g02534
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5190717 Stre Stre1g04255 Stre-Chr1:128466298 Stre7g01084 Stre-Chr7:39894535
5221183 Stre Stre3g02287 Stre-Chr3:33624773 Stre1g04255 Stre-Chr1:128466298
5228191 Stre Stre1g04255 Stre-Chr1:128466298 Stre6g01092 Stre-Chr6:51245679