AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fro14g01225 | ATGGTTTATTCACAATTAACCGCTTTAATGGAAGACAAAACATGCAAGTCGCCCAAGAACTATTTAAACTTCCCTTTGAATCCTCCTGATGCCACAACAGATAATATTGAACTCGATTTTTCTGATACGTTTGGTCCTCTACCAGCTCATGGAAATTCTGAAATTTCAAATGAAACTATATATGATGATCCGTTGGTCATCTGCAACCGATCACATTCTTTAGTGGGCCCCACACCGCGTGTTAGCCACTTGCTAAATCTAAAGAAGCTAACCATATGTGAAACCGAGGAACTAGAGGATTTTAATGATGTTGCAGTGGAAAGAGTCGAGGAAGGCTGTGAGAAGGATGGGGACAAGTGTGTGAAGGTGCAGGGTGTTGGGATTGAAGATTTTGAAGTTCTGAAAGTTGTGGGCCAGGGGGCGTTCGGGAAAGTATATCAAGTTAGAAAGAGAGATACTTTGGAAATATATGCAATGAAGGTTGTGAGGAAAGATAAGATTGTGGAGAAAAACCATGCTGCATATATGAAAGCTGAGAGGGATATCTTGACAAAGATTGATCATCCTTTCATAGTCCAACTCAGATACTCTTTCCAGACAAAATATAGACTTTACCTTGTTTTGGACTTTGTGAATGGAGGACATCTCTTTTTCCAGCTCTATCACCATGGGCTGTTTCGAGAGGATCTGGCCCGTATTTATACTGCAGAGATTGTTTCAGCTGTTTCTCACCTTCATGCAAATGGCATTATGCATAGGGATCTTAAGCCTGAAAATATTCTACTTGATGTGGATGGCCATGCTTTGCTTACCGACTTTGGGCTAGCAAAAGAATTTGACAAAAATGCAAGATCAAATTCTTTGTGTGGGACAGTAGAGTACATGTCACCTGAAATTATTCTTGGCAAGGGACATGATAAGGCTGCAGATTGGTGGAGTGTTGGGATCTTGTTGTTTGAGATGCTCACAGGACAGCCACCATTCCATGGAGGTAACCGAGATAAAGTACAGAAGAAGATAGTGAAAGATAAATTAAAGCTACCTGCATTTTTGACAAGCGAAGCACACTGCCTTCTGAAAGGGTTGCTGCAAAAGGATCCAAGCAAGAGGCTTGGAAACGGGTTAATGGGAAGTGATGAAATAAAGTATCACAAGTGGTTCAAGCCAATCAACTGGAAAAAACTAGACGCCCGAGAAATCCAGCCCAGTTTTCGGCCTGAAGTTGCAGGAAACCAATGCATTGCAAATTTTGAAAAACGCTGGACAGATATGCCACTATTGGACTCCCCTGCATCCAGCCCAGATGCTTCAGCAAACCTCTTTCAAGGATTTACTTATGTCAAGCCTGCAGCCTCTTTTCTCAGGAGAAACAGCCCGGTCTGCTAA | 1386 | 42.14 | MVYSQLTALMEDKTCKSPKNYLNFPLNPPDATTDNIELDFSDTFGPLPAHGNSEISNETIYDDPLVICNRSHSLVGPTPRVSHLLNLKKLTICETEELEDFNDVAVERVEEGCEKDGDKCVKVQGVGIEDFEVLKVVGQGAFGKVYQVRKRDTLEIYAMKVVRKDKIVEKNHAAYMKAERDILTKIDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYTAEIVSAVSHLHANGIMHRDLKPENILLDVDGHALLTDFGLAKEFDKNARSNSLCGTVEYMSPEIILGKGHDKAADWWSVGILLFEMLTGQPPFHGGNRDKVQKKIVKDKLKLPAFLTSEAHCLLKGLLQKDPSKRLGNGLMGSDEIKYHKWFKPINWKKLDAREIQPSFRPEVAGNQCIANFEKRWTDMPLLDSPASSPDASANLFQGFTYVKPAASFLRRNSPVC | 461 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fro14g01225 | 461 | SMART | serkin-6 | 131 | 387 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fro14g01225 | 461 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 250 | 262 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Fro14g01225 | 461 | Gene3D | Phosphorylase Kinase; domain 1 | 128 | 429 | - | - | |
| Fro14g01225 | 461 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 121 | 452 | - | - | |
| Fro14g01225 | 461 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 388 | 456 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fro14g01225 | 461 | FunFam | Non-specific serine-threonine protein kinase | 211 | 406 | - | - | |
| Fro14g01225 | 461 | CDD | STKc-AGC | 137 | 387 | IPR045270 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
| Fro14g01225 | 461 | FunFam | Non-specific serine-threonine protein kinase | 128 | 232 | - | - | |
| Fro14g01225 | 461 | SUPERFAMILY | Protein kinase-like (PK-like) | 128 | 450 | IPR011009 | - | |
| Fro14g01225 | 461 | Pfam | Protein kinase domain | 131 | 387 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fro14g01225 | 461 | ProSiteProfiles | Protein kinase domain profile. | 131 | 387 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Fro14g01225 | 461 | Gene3D | Transferase(Phosphotransferase) domain 1 | 211 | 406 | - | - | |
| Fro14g01225 | 461 | ProSitePatterns | Protein kinases ATP-binding region signature. | 137 | 164 | IPR017441 | GO:0005524(InterPro) | |
| Fro14g01225 | 461 | SMART | pkinase-C-6 | 388 | 448 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fro14g01225 | K04688 | ribosomal protein S6 kinase beta [EC:2.7.11.1] |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 2522685 | Fro | Fro14g01225 | Fro-Chr14:19746377 | Fro16g00821 | Fro-Chr16:10373909 | |
| 2541338 | Fro | Fro11g00407 | Fro-Chr11:3578138 | Fro14g01225 | Fro-Chr14:19746377 | |
| 2563269 | Fro | Fro13g01489 | Fro-Chr13:24161311 | Fro14g01225 | Fro-Chr14:19746377 | |
| 2566658 | Fro | Fro14g01225 | Fro-Chr14:19746377 | Fro16g01121 | Fro-Chr16:16077005 | |
| 2567491 | Fro | Fro14g01225 | Fro-Chr14:19746377 | Fro3g00654 | Fro-Chr3:8061339 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Fro1g00536 | . | 112 | 555 | AGC Kinase gene family | AT1G79250 | 70.925 | 0.0 | 650.0 | |
| Fro2g00255 | . | 68 | 765 | AGC Kinase gene family | AT2G44830 | 64.266 | 0.0 | 849.0 | |
| Fro2g00730 | . | 5 | 373 | AGC Kinase gene family | AT3G25250 | 60.263 | 5.51e-155 | 442.0 | |
| Fro2g00973 | ACH | 135 | 233 | AGC Kinase gene family | AT5G58140 | 45.37 | 4.59e-21 | 96.3 | |
| Fro3g00518 | . | 4 | 491 | AGC Kinase gene family | AT5G04510 | 75.203 | 0.0 | 764.0 | |
| Fro3g00654 | . | 1 | 465 | AGC Kinase gene family | AT3G08720 | 66.454 | 0.0 | 627.0 | |
| Fro3g00815 | . | 1 | 1288 | AGC Kinase gene family | AT3G17850 | 63.768 | 0.0 | 1533.0 | |
| Fro4g00328 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 77.457 | 0.0 | 825.0 | |
| Fro4g00654 | . | 1 | 471 | AGC Kinase gene family | AT1G53700 | 62.398 | 0.0 | 546.0 | |
| Fro4g01248 | . | 129 | 325 | AGC Kinase gene family | AT3G08730 | 23.318 | 6.28e-06 | 47.0 | |
| Fro5g00714 | . | 2 | 499 | AGC Kinase gene family | AT5G40030 | 68.297 | 0.0 | 684.0 | |
| Fro5g00755 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 68.081 | 0.0 | 650.0 | |
| Fro5g00842 | . | 16 | 394 | AGC Kinase gene family | AT3G20830 | 56.053 | 2.98e-144 | 413.0 | |
| Fro5g01007 | . | 71 | 451 | AGC Kinase gene family | AT3G44610 | 56.919 | 8.13e-153 | 439.0 | |
| Fro5g01474 | . | 17 | 404 | AGC Kinase gene family | AT1G51170 | 58.376 | 9.82e-159 | 451.0 | |
| Fro6g00178 | . | 17 | 404 | AGC Kinase gene family | AT1G51170 | 54.822 | 9.19e-146 | 417.0 | |
| Fro6g00246 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 60.707 | 0.0 | 529.0 | |
| Fro7g00201 | . | 24 | 538 | AGC Kinase gene family | AT4G14350 | 83.14 | 0.0 | 903.0 | |
| Fro7g01072 | WGDA | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 7.75e-21 | 95.5 | |
| Fro9g00442 | ACH,WGDA | 135 | 259 | AGC Kinase gene family | AT5G58140 | 40.299 | 3.57e-21 | 96.7 | |
| Fro9g02056 | . | 27 | 547 | AGC Kinase gene family | AT3G23310 | 81.609 | 0.0 | 899.0 | |
| Fro10g00368 | . | 85 | 586 | AGC Kinase gene family | AT5G47750 | 81.657 | 0.0 | 835.0 | |
| Fro11g00407 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 56.726 | 1.24e-180 | 512.0 | |
| Fro11g00639 | . | 3 | 505 | AGC Kinase gene family | AT5G09890 | 75.446 | 0.0 | 814.0 | |
| Fro11g01606 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 5.95e-22 | 99.0 | |
| Fro11g01673 | . | 84 | 578 | AGC Kinase gene family | AT3G27580 | 69.08 | 0.0 | 684.0 | |
| Fro11g01829 | . | 118 | 910 | AGC Kinase gene family | AT5G58140 | 76.493 | 0.0 | 1269.0 | |
| Fro11g01830 | . | 70 | 910 | AGC Kinase gene family | AT5G58140 | 73.623 | 0.0 | 1275.0 | |
| Fro11g02438 | . | 119 | 555 | AGC Kinase gene family | AT1G79250 | 72.584 | 0.0 | 656.0 | |
| Fro11g03236 | . | 1 | 161 | AGC Kinase gene family | AT1G48490 | 41.848 | 2.32e-17 | 79.3 | |
| Fro11g03295 | . | 262 | 1294 | AGC Kinase gene family | AT3G17850 | 69.37 | 0.0 | 1434.0 | |
| Fro12g00443 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 59.611 | 0.0 | 521.0 | |
| Fro12g00772 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 77.842 | 0.0 | 839.0 | |
| Fro12g00848 | . | 8 | 421 | AGC Kinase gene family | AT3G25250 | 59.048 | 2.69e-165 | 468.0 | |
| Fro12g02082 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 73.577 | 0.0 | 736.0 | |
| Fro12g02402 | . | 11 | 449 | AGC Kinase gene family | AT3G14370 | 62.613 | 0.0 | 528.0 | |
| Fro13g00871 | . | 18 | 996 | AGC Kinase gene family | AT3G45780 | 68.332 | 0.0 | 1340.0 | |
| Fro13g01884 | . | 371 | 934 | AGC Kinase gene family | AT3G52890 | 59.578 | 0.0 | 650.0 | |
| Fro14g00117 | . | 260 | 934 | AGC Kinase gene family | AT3G52890 | 53.323 | 0.0 | 661.0 | |
| Fro14g00285 | . | 119 | 346 | AGC Kinase gene family | AT3G08730 | 23.32 | 5.67e-08 | 53.9 | |
| Fro14g01225 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 68.298 | 0.0 | 647.0 | |
| Fro15g01751 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 63.158 | 0.0 | 540.0 | |
| Fro15g01752 | . | 465 | 896 | AGC Kinase gene family | AT3G52890 | 65.741 | 0.0 | 583.0 | |
| Fro15g02360 | . | 41 | 1157 | AGC Kinase gene family | AT5G62310 | 56.338 | 0.0 | 1192.0 | |
| Fro16g00189 | . | 110 | 586 | AGC Kinase gene family | AT5G47750 | 77.963 | 0.0 | 755.0 | |
| Fro16g00820 | . | 134 | 425 | AGC Kinase gene family | AT1G45160 | 38.356 | 7.86e-60 | 201.0 | |
| Fro16g00821 | . | 473 | 997 | AGC Kinase gene family | AT1G45160 | 59.116 | 0.0 | 645.0 | |
| Fro16g01107 | . | 135 | 379 | AGC Kinase gene family | AT3G08720 | 38.866 | 6.71e-48 | 177.0 | |
| Fro16g01121 | . | 135 | 379 | AGC Kinase gene family | AT3G08720 | 38.866 | 6.99e-48 | 177.0 | |
| Fro16g02384 | . | 134 | 346 | AGC Kinase gene family | AT3G08730 | 24.255 | 8.00e-08 | 53.5 | |
| Fro17g00318 | . | 1 | 519 | AGC Kinase gene family | AT2G20470 | 77.438 | 0.0 | 840.0 | |
| Fro17g00385 | . | 10 | 360 | AGC Kinase gene family | AT4G13000 | 56.604 | 1.12e-139 | 400.0 | |
| Fro18g00272 | . | 11 | 372 | AGC Kinase gene family | AT3G25250 | 58.378 | 1.09e-146 | 421.0 | |
| Fro18g01038 | . | 30 | 1159 | AGC Kinase gene family | AT5G62310 | 57.949 | 0.0 | 1259.0 | |
| Fro10000216.1g00005 | . | 1167 | 1231 | AGC Kinase gene family | AT1G48490 | 60.0 | 2.91e-17 | 72.0 | |
| Fro10000106.1g00004 | . | 9 | 525 | AGC Kinase gene family | AT2G26700 | 56.449 | 0.0 | 570.0 | |
| Fro10000192.1g00002 | . | 68 | 765 | AGC Kinase gene family | AT2G44830 | 64.117 | 0.0 | 845.0 | |
| Fro10000197.1g00005 | . | 24 | 538 | AGC Kinase gene family | AT4G14350 | 83.14 | 0.0 | 903.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Fro | Pkinase | 8.9e-73 | CL0016 | PK | AGC-Pl |