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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g02092 ATGGGACTTTGCTTCTCTTCGACTACGGCGGATGAAGAACCTGCCAATCATCCTCATTTTACGGGAGGTAAAGTCACCTTCATCACTAACAAGGATGTTTGGAACCAAAAGCTCTCAGAAGCAAAGACTCAAGGCAAAATAGTTATTGCTAACTTTAGTGCATCTTGGTGTGGTCCATGCAAATCAATTGCACCATTATACATTGAGCTTTCCGAGAAGCATCTTTCTCTTATGTTTCTGACCATAGACGTTGATGAATTAACGGAATTAAGCACACAATGGGATGTAAAAGCTACTCCAACATTCTTCTTCCTTAGAGATGGGCAGCAAATTGATAAAATCGTGGGAGCCAACAAGGCTGAGCTGCAGGAAAAGTTATCCACCATAGTCGATTCACAAGTCCCAGGTGATCAAAAGTAA 420 41.67 MGLCFSSTTADEEPANHPHFTGGKVTFITNKDVWNQKLSEAKTQGKIVIANFSASWCGPCKSIAPLYIELSEKHLSLMFLTIDVDELTELSTQWDVKATPTFFFLRDGQQIDKIVGANKAELQEKLSTIVDSQVPGDQK 139
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g02092 139 Gene3D Glutaredoxin 3 137 - -
Hetu33g02092 139 PRINTS Thioredoxin family signature 48 56 - -
Hetu33g02092 139 PRINTS Thioredoxin family signature 56 65 - -
Hetu33g02092 139 PRINTS Thioredoxin family signature 95 106 - -
Hetu33g02092 139 ProSiteProfiles Thioredoxin domain profile. 7 131 IPR013766 -
Hetu33g02092 139 ProSitePatterns Thioredoxin family active site. 49 67 IPR017937 -
Hetu33g02092 139 PANTHER THIOREDOXIN 23 127 IPR050620 -
Hetu33g02092 139 CDD TRX-family 38 126 - -
Hetu33g02092 139 SUPERFAMILY Thioredoxin-like 21 129 IPR036249 -
Hetu33g02092 139 Pfam Thioredoxin 27 126 IPR013766 -
Hetu33g02092 139 FunFam Thioredoxin 22 131 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g02092 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
300187 Hetu31g02158 Hetu33g02092
301181 Hetu32g02164 Hetu33g02092
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3370901 Hetu Hetu33g02092 Hetu-Chr33:117752845 Hetu46g01602 Hetu-Chr46:88908748
3532375 Hetu Hetu1g00028 Hetu-Chr1:1372332 Hetu33g02092 Hetu-Chr33:117752845
3581214 Hetu Hetu2g00104 Hetu-Chr2:3493249 Hetu33g02092 Hetu-Chr33:117752845
3581232 Hetu Hetu2g00031 Hetu-Chr2:986473 Hetu33g02092 Hetu-Chr33:117752845
3620625 Hetu Hetu3g00047 Hetu-Chr3:2518116 Hetu33g02092 Hetu-Chr33:117752845
3625247 Hetu Hetu31g02158 Hetu-Chr31:123329499 Hetu33g02092 Hetu-Chr33:117752845
3627192 Hetu Hetu32g02164 Hetu-Chr32:125371041 Hetu33g02092 Hetu-Chr33:117752845