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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01698 ATGCAGTTGGATAATAGTATAGCGCGCGATAATTCTAGGCTTGTATACATCAATAACCCTCAAAGAACCAATGAAGAATATGAATTCACAGGGAACAAGATCACCACTAGCAAGTATACCGTCATTAATTTCTTACCCAAGAATCTCTTCATCCAGTTTCATCGGGTGGCGTACATATATTTTTTAGTTATCGCTGCCCTCAATCAGCTTCCTCCGCTTGCAGTCTTTGGGAGAACCGTATCTCTTTTCCCACTACTTTTTGTTCTCACGGTAACTGCTATAAAAGATGGTTATGAGGATTGGCGAAGACATAGATCTGACAGGAATGAGAATAATAAAGAGTCATTGGTGCTTCAAATTGGTAAGTTTAAGCCAAAAAGATGGAAGGATATCCAGGTAGGCGAGGTGGTCAAGATTTGTGCTGATGAGGCGATCCCGTGTGACATAGTGCTGCTAGGGACTAGTGATCCTAGTGGTGTTGCTTACATTCAAACCATGAATTTAGATGGTGAATCGAATTTAAAAACTCGGTATGCTAGACAAGAAACATCTTTTATGTCATTTGATGGAGAGTTAATTTCAGGGGTTATTAGATGTGAACAACCCAATAGAAACATATATGAATTCACCGCCAATATGGAATTGAATTCACACAAAGTTTCACTTAGCCAATCAAATATTATTTTGCGCGGGTGTCAAGTGAAAAACACTGAATGGGTGGTGGGCGTGGTGGTTTATGCTGGTCAAGAAACAAAAGCAATGCTAAATAGTGCGATTTCTCCATCTAAAAGAAGCAAATTGGAACAGGCAATGAACAAAGAAACTATTTGGTTATCTGTTTTTCTTTTTGTGCTATGTCTCGTTGTAGCCATTGGGATGTGTTTATGGTTAATTCGTCATCAGCACCAAATTGATACATTGCCTTATTACAGAAAAAGCTATTTAGTAAAAGGAAAATTCCCGGGAAAACCATATAAATATTATGGGATACCTATGGAGACCTTCTTTGCGTTCTTGAGTTCCATTATTGTGTTTCAGATAATGATACCGATTTCTTTGTATATTACTATGGAGTTGGTGAGGCTAGGACAATCTTATTTCATGATCGAAGATAAACATATGTATGATAGCTTCACCAACACAAGGTTTCAGTGCAGATCTTTAAATATCAATGAAGATTTGGGTCAAATACGGTATGTATTTTCTGATAAGACTGGTACACTTACTGAGAATAAAATGGAATTTCGGAAAGCTTCTGTGTTTGGGAAAAATTATTGTAATTCCTCCATGGTGGATGGCATTACACAGGATTCAGAGACCACAGGTTTGGCCCTTTACTTGCCTTATTAA 1350 37.78 MQLDNSIARDNSRLVYINNPQRTNEEYEFTGNKITTSKYTVINFLPKNLFIQFHRVAYIYFLVIAALNQLPPLAVFGRTVSLFPLLFVLTVTAIKDGYEDWRRHRSDRNENNKESLVLQIGKFKPKRWKDIQVGEVVKICADEAIPCDIVLLGTSDPSGVAYIQTMNLDGESNLKTRYARQETSFMSFDGELISGVIRCEQPNRNIYEFTANMELNSHKVSLSQSNIILRGCQVKNTEWVVGVVVYAGQETKAMLNSAISPSKRSKLEQAMNKETIWLSVFLFVLCLVVAIGMCLWLIRHQHQIDTLPYYRKSYLVKGKFPGKPYKYYGIPMETFFAFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDKHMYDSFTNTRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRKASVFGKNYCNSSMVDGITQDSETTGLALYLPY 449
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01698 449 Pfam Phospholipid-translocating ATPase N-terminal 15 80 IPR032631 -
Fra18g01698 449 ProSitePatterns E1-E2 ATPases phosphorylation site. 403 409 IPR018303 -
Fra18g01698 449 Pfam E1-E2 ATPase 114 357 - -
Fra18g01698 449 SUPERFAMILY Calcium ATPase, transmembrane domain M 29 395 IPR023298 -
Fra18g01698 449 NCBIfam HAD-IC family P-type ATPase 80 197 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Fra18g01698 449 NCBIfam HAD-IC family P-type ATPase 334 428 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Fra18g01698 449 Gene3D - 385 397 - -
Fra18g01698 449 SUPERFAMILY Calcium ATPase, transduction domain A 115 253 IPR008250 -
Fra18g01698 449 Gene3D - 411 428 IPR023299 GO:0000166(InterPro)
Fra18g01698 449 NCBIfam phospholipid-translocating P-type ATPase 29 429 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Fra18g01698 449 SUPERFAMILY HAD-like 388 429 IPR036412 -
Fra18g01698 449 Gene3D - 398 410 IPR023214 -
Fra18g01698 449 Gene3D - 86 257 - -
Fra18g01698 449 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 8 427 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01698 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2443922 Fra Fra18g01698 Fra-Chr18:64900245 Fra7g00943 Fra-Chr7:60842766
2490040 Fra Fra14g01262 Fra-Chr14:44116260 Fra18g01698 Fra-Chr18:64900245
2501551 Fra Fra18g01698 Fra-Chr18:64900245 Fra4g01202 Fra-Chr4:50885929
2501835 Fra Fra18g01698 Fra-Chr18:64900245 Fra6g00088 Fra-Chr6:2119699
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fra1g00076 . 14 821 Primary Pumps ATPases gene family AT4G39080 73.548 0.0 1260.0
Fra1g00818 . 1 70 Primary Pumps ATPases gene family AT5G55290 87.143 1.50e-41 128.0
Fra1g01046 . 1 954 Primary Pumps ATPases gene family AT1G80660 83.333 0.0 1635.0
Fra1g01057 . 2 769 Primary Pumps ATPases gene family AT1G15690 88.281 0.0 1375.0
Fra1g01652 ACH,WGDA 58 442 Primary Pumps ATPases gene family AT1G20260 28.928 1.08e-29 120.0
Fra1g01720 WGDA 13 1193 Primary Pumps ATPases gene family AT1G68710 74.174 0.0 1867.0
Fra2g00208 ACH 1 770 Primary Pumps ATPases gene family AT1G15690 87.273 0.0 1362.0
Fra2g01362 WGDA 1 237 Primary Pumps ATPases gene family AT1G64200 75.527 8.27e-125 352.0
Fra2g01415 WGDA 1 126 Primary Pumps ATPases gene family AT4G02620 87.302 1.22e-81 234.0
Fra2g01625 . 6 961 Primary Pumps ATPases gene family AT3G60330 79.458 0.0 1561.0
Fra3g00022 . 6 960 Primary Pumps ATPases gene family AT3G47950 92.251 0.0 1781.0
Fra3g00293 . 40 233 Primary Pumps ATPases gene family AT4G09650 62.371 1.09e-85 253.0
Fra3g00465 . 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Fra3g00475 . 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Fra3g00810 WGDA 1 180 Primary Pumps ATPases gene family AT4G32530 88.889 6.47e-111 312.0
Fra3g00823 WGDA 1 817 Primary Pumps ATPases gene family AT2G28520 79.315 0.0 1321.0
Fra3g00832 WGDA 2 440 Primary Pumps ATPases gene family AT3G42050 78.3 0.0 735.0
Fra4g00164 . 2 166 Primary Pumps ATPases gene family AT1G75630 98.182 1.09e-111 313.0
Fra4g00265 . 36 383 Primary Pumps ATPases gene family AT1G15700 30.579 1.55e-31 120.0
Fra4g00366 . 868 1003 Primary Pumps ATPases gene family AT1G59820 72.059 1.27e-68 221.0
Fra4g00753 WGDA 1 203 Primary Pumps ATPases gene family AT5G47030 71.154 2.23e-108 307.0
Fra4g00986 . 13 1189 Primary Pumps ATPases gene family AT1G68710 73.407 0.0 1836.0
Fra4g01138 . 58 442 Primary Pumps ATPases gene family AT1G20260 28.928 1.35e-29 120.0
Fra4g01202 . 5 1212 Primary Pumps ATPases gene family AT1G59820 70.545 0.0 1838.0
Fra5g00718 . 1 1014 Primary Pumps ATPases gene family AT4G37640 80.217 0.0 1670.0
Fra6g00088 . 1 1203 Primary Pumps ATPases gene family AT1G17500 74.442 0.0 1898.0
Fra6g01407 WGDA 1 623 Primary Pumps ATPases gene family AT1G78900 93.579 0.0 1207.0
Fra6g01489 . 2 951 Primary Pumps ATPases gene family AT4G30110 53.44 0.0 1011.0
Fra6g01503 . 1 1058 Primary Pumps ATPases gene family AT4G29900 72.608 0.0 1550.0
Fra6g01514 . 3 948 Primary Pumps ATPases gene family AT4G30190 85.956 0.0 1634.0
Fra6g01573 . 6 849 Primary Pumps ATPases gene family AT3G42640 78.91 0.0 1373.0
Fra6g01581 . 1 768 Primary Pumps ATPases gene family AT1G15690 88.151 0.0 1372.0
Fra7g00874 . 1 998 Primary Pumps ATPases gene family AT1G10130 83.533 0.0 1722.0
Fra7g00943 . 37 1145 Primary Pumps ATPases gene family AT5G04930 71.25 0.0 1688.0
Fra7g01271 . 34 383 Primary Pumps ATPases gene family AT1G15700 69.274 6.04e-176 493.0
Fra7g01352 . 1 1014 Primary Pumps ATPases gene family AT4G37640 80.197 0.0 1670.0
Fra7g01592 . 3 948 Primary Pumps ATPases gene family AT4G30190 86.906 0.0 1657.0
Fra7g01607 . 14 1058 Primary Pumps ATPases gene family AT4G29900 72.633 0.0 1549.0
Fra7g01664 . 1 351 Primary Pumps ATPases gene family AT3G28715 92.593 0.0 696.0
Fra7g02256 . 1 1177 Primary Pumps ATPases gene family AT5G23630 74.937 0.0 1831.0
Fra7g02438 . 100 804 Primary Pumps ATPases gene family AT4G37270 71.105 0.0 1004.0
Fra7g02534 . 229 565 Primary Pumps ATPases gene family AT1G78900 27.92 2.01e-27 114.0
Fra7g02642 WGDA 8 487 Primary Pumps ATPases gene family AT1G20260 97.083 0.0 960.0
Fra7g02700 . 1 1020 Primary Pumps ATPases gene family AT1G27770 77.941 0.0 1605.0
Fra7g02846 . 229 565 Primary Pumps ATPases gene family AT1G78900 27.92 2.01e-27 114.0
Fra7g02949 . 14 821 Primary Pumps ATPases gene family AT4G39080 72.806 0.0 1236.0
Fra7g02954 . 297 338 Primary Pumps ATPases gene family AT4G30190 85.714 4.69e-20 79.3
Fra7g02957 ACH,WGDA 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Fra7g03231 . 1 374 Primary Pumps ATPases gene family AT1G12840 80.214 0.0 641.0
Fra7g03336 . 7 180 Primary Pumps ATPases gene family AT4G32530 91.954 4.30e-109 307.0
Fra8g00366 WGDA 1 126 Primary Pumps ATPases gene family AT4G02620 87.302 1.22e-81 234.0
Fra8g00440 WGDA 1 236 Primary Pumps ATPases gene family AT1G64200 77.119 4.99e-128 360.0
Fra8g00770 . 33 1139 Primary Pumps ATPases gene family AT5G44240 81.515 0.0 1900.0
Fra8g00872 ACH 1 70 Primary Pumps ATPases gene family AT5G55290 82.857 1.05e-39 123.0
Fra8g01108 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 79.11 0.0 1330.0
Fra8g01454 . 351 974 Primary Pumps ATPases gene family AT1G63440 38.811 1.39e-120 389.0
Fra8g01816 . 354 981 Primary Pumps ATPases gene family AT1G63440 36.446 1.27e-115 375.0
Fra9g00147 . 1 261 Primary Pumps ATPases gene family AT3G58730 73.282 1.28e-137 385.0
Fra9g00246 . 1 166 Primary Pumps ATPases gene family AT1G75630 98.193 5.38e-112 313.0
Fra9g00689 . 5 1199 Primary Pumps ATPases gene family AT1G17500 56.159 0.0 1432.0
Fra9g01045 . 1 1178 Primary Pumps ATPases gene family AT3G27870 73.08 0.0 1813.0
Fra9g01082 . 1 351 Primary Pumps ATPases gene family AT3G28715 93.447 0.0 701.0
Fra9g01250 . 889 1017 Primary Pumps ATPases gene family AT1G27770 69.767 6.30e-60 196.0
Fra9g01251 . 1 860 Primary Pumps ATPases gene family AT4G37640 81.301 0.0 1424.0
Fra9g01849 . 31 1158 Primary Pumps ATPases gene family AT5G04930 69.895 0.0 1671.0
Fra10g00480 . 40 362 Primary Pumps ATPases gene family AT4G38510 29.755 3.17e-29 115.0
Fra10g00686 . 92 203 Primary Pumps ATPases gene family AT5G47030 80.357 2.54e-66 197.0
Fra10g00886 . 3 948 Primary Pumps ATPases gene family AT4G30190 87.223 0.0 1661.0
Fra10g00890 . 8 1051 Primary Pumps ATPases gene family AT5G57110 73.485 0.0 1565.0
Fra10g00961 . 1 1061 Primary Pumps ATPases gene family AT1G07670 78.928 0.0 1722.0
Fra10g00962 . 1 1061 Primary Pumps ATPases gene family AT1G07670 79.605 0.0 1732.0
Fra10g01062 . 1 1024 Primary Pumps ATPases gene family AT2G41560 68.12 0.0 1463.0
Fra10g01652 . 1 1207 Primary Pumps ATPases gene family AT1G17500 63.115 0.0 1573.0
Fra11g00004 . 52 851 Primary Pumps ATPases gene family AT1G16780 85.5 0.0 1406.0
Fra11g01258 . 14 323 Primary Pumps ATPases gene family AT4G29900 67.5 1.90e-142 427.0
Fra11g01259 . 337 1054 Primary Pumps ATPases gene family AT5G57110 75.242 0.0 1101.0
Fra11g01492 . 84 160 Primary Pumps ATPases gene family AT1G76030 37.975 1.19e-06 43.5
Fra11g02166 . 140 226 Primary Pumps ATPases gene family AT4G33520 66.667 1.03e-36 125.0
Fra11g02675 ACH 1 821 Primary Pumps ATPases gene family AT4G39080 78.129 0.0 1316.0
Fra11g02782 . 87 437 Primary Pumps ATPases gene family AT1G20260 27.596 6.03e-28 114.0
Fra11g02801 . 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Fra12g00651 . 4 104 Primary Pumps ATPases gene family AT4G23710 54.455 5.34e-33 109.0
Fra12g01454 . 2 1153 Primary Pumps ATPases gene family AT5G04930 67.38 0.0 1645.0
Fra13g00364 WGDA 1 203 Primary Pumps ATPases gene family AT5G47030 70.813 1.84e-107 305.0
Fra13g00645 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 28.928 1.20e-29 120.0
Fra13g00933 . 244 342 Primary Pumps ATPases gene family AT5G62670 69.697 8.31e-38 134.0
Fra14g00568 WGDA 1 623 Primary Pumps ATPases gene family AT1G78900 93.74 0.0 1210.0
Fra14g00672 . 4 949 Primary Pumps ATPases gene family AT2G18960 85.729 0.0 1632.0
Fra14g00740 ACH 1 770 Primary Pumps ATPases gene family AT1G15690 88.961 0.0 1385.0
Fra14g01218 ACH,WGDA 58 442 Primary Pumps ATPases gene family AT1G20260 28.928 1.04e-29 120.0
Fra14g01262 WGDA 2 1193 Primary Pumps ATPases gene family AT1G68710 73.177 0.0 1850.0
Fra15g00013 . 42 1085 Primary Pumps ATPases gene family AT3G21180 71.606 0.0 1513.0
Fra15g00045 ACH 1 1209 Primary Pumps ATPases gene family AT1G17500 74.01 0.0 1888.0
Fra15g00175 . 2 768 Primary Pumps ATPases gene family AT1G15690 88.136 0.0 1379.0
Fra15g00232 . 255 342 Primary Pumps ATPases gene family AT1G12840 37.234 1.38e-07 45.4
Fra15g00437 ACH,WGDA 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Fra15g00538 WGDA 1 487 Primary Pumps ATPases gene family AT4G38510 96.319 0.0 962.0
Fra15g00662 . 1 1014 Primary Pumps ATPases gene family AT4G37640 79.507 0.0 1635.0
Fra15g00871 . 1 1001 Primary Pumps ATPases gene family AT5G44790 67.583 0.0 1385.0
Fra16g00273 . 1 487 Primary Pumps ATPases gene family AT4G38510 96.728 0.0 967.0
Fra16g00485 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Fra16g00615 . 6 960 Primary Pumps ATPases gene family AT3G47950 92.147 0.0 1783.0
Fra16g01051 ACH 1 70 Primary Pumps ATPases gene family AT5G55290 82.857 1.88e-39 122.0
Fra16g01182 . 47 979 Primary Pumps ATPases gene family AT1G63440 54.545 0.0 1035.0
Fra16g01540 WGDA 2 441 Primary Pumps ATPases gene family AT3G42050 76.94 0.0 728.0
Fra16g01567 WGDA 1 817 Primary Pumps ATPases gene family AT2G28520 79.804 0.0 1331.0
Fra16g01594 WGDA 1 180 Primary Pumps ATPases gene family AT4G32530 90.0 6.61e-111 312.0
Fra16g01792 . 1 990 Primary Pumps ATPases gene family AT1G63440 72.837 0.0 1476.0
Fra17g00079 . 43 383 Primary Pumps ATPases gene family AT1G15700 70.175 2.78e-170 478.0
Fra17g00107 . 16 233 Primary Pumps ATPases gene family AT4G09650 54.148 5.44e-86 253.0
Fra17g00303 . 2 1021 Primary Pumps ATPases gene family AT3G57330 69.561 0.0 1462.0
Fra17g00767 . 24 1016 Primary Pumps ATPases gene family AT3G63380 68.024 0.0 1338.0
Fra17g01038 ACH 1 1203 Primary Pumps ATPases gene family AT1G17500 73.51 0.0 1881.0
Fra17g01116 . 3 739 Primary Pumps ATPases gene family AT3G42640 85.21 0.0 1287.0
Fra17g01493 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Fra18g00127 . 2 1021 Primary Pumps ATPases gene family AT3G57330 67.761 0.0 1452.0
Fra18g00208 . 1 236 Primary Pumps ATPases gene family AT5G13450 53.252 3.47e-90 265.0
Fra18g00567 . 42 979 Primary Pumps ATPases gene family AT1G63440 57.234 0.0 1088.0
Fra18g00574 . 1 261 Primary Pumps ATPases gene family AT3G58730 79.31 4.12e-155 430.0
Fra18g01278 . 1 1061 Primary Pumps ATPases gene family AT1G07810 79.398 0.0 1734.0
Fra18g01551 . 23 1016 Primary Pumps ATPases gene family AT3G63380 68.191 0.0 1318.0
Fra18g01698 . 62 486 Primary Pumps ATPases gene family AT5G04930 61.033 0.0 554.0
Fra10000130.1g00005 . 10 960 Primary Pumps ATPases gene family AT3G47950 87.815 0.0 1689.0