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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00031 ATGAAGGTGCTATATTTAGAAGTGTTAAAGGTTGCACGGGATCAAAACAAGTCGTTAACGTTGAAAATCGAGAAGTTGTTGCAACAAAGGGGCGAGCATCTGACTTCAATCGTCACCGGAAACTTCAAATTTCAGGGTAAGCGTACTGCGGTTACTTTTTCAGAGATTGAAATGGGGCATTGCTTCTCTTCGCCTCGGGCTGATGAAGACGAGACCAACAGTCATGCTCAGCTTGCGGGAGGTAACGTGACTCTCATCACTGCCAAGAACGCTTGGGATCAAAAACTGGCAGAAGCAAAGACTCAAGGCAAAATAGTGATTGGCAACTTCAGTGCAACTTGGTGTGGTCCATGCAAATCAATGGCACCTTACTACATTGAGCTATCAGAGAAGTATCCTTCTCTTATGTTTCTGACCGTAGACGTTGACGAATTAACGGATTTTAGCACACAACTGGATGTAAAAGCTACTCCAACATTCTTCTTCTTTAAAGATGGTCAACAAATTGATAAACTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCGCCATTGTTGATTCACAAGCAACCATAAATCCGTAA 591 42.98 MKVLYLEVLKVARDQNKSLTLKIEKLLQQRGEHLTSIVTGNFKFQGKRTAVTFSEIEMGHCFSSPRADEDETNSHAQLAGGNVTLITAKNAWDQKLAEAKTQGKIVIGNFSATWCGPCKSMAPYYIELSEKYPSLMFLTVDVDELTDFSTQLDVKATPTFFFFKDGQQIDKLVGANKPELQKKITAIVDSQATINP 196
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00031 196 PRINTS Thioredoxin family signature 153 164 - -
Hetu2g00031 196 PRINTS Thioredoxin family signature 114 123 - -
Hetu2g00031 196 PRINTS Thioredoxin family signature 106 114 - -
Hetu2g00031 196 Pfam Thioredoxin 85 185 IPR013766 -
Hetu2g00031 196 Gene3D Glutaredoxin 58 195 - -
Hetu2g00031 196 CDD TRX-family 96 184 - -
Hetu2g00031 196 Coils Coil 9 29 - -
Hetu2g00031 196 PANTHER THIOREDOXIN 81 186 IPR050620 -
Hetu2g00031 196 SUPERFAMILY Thioredoxin-like 77 189 IPR036249 -
Hetu2g00031 196 ProSiteProfiles Thioredoxin domain profile. 77 189 IPR013766 -
Hetu2g00031 196 FunFam Thioredoxin 80 189 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00031 K03671 thioredoxin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr2:986473 Hetu48g01450 Hetu-Chr48:87161022 dispersed
Hetu Hetu-Chr1:1372332 Hetu2g00031 Hetu-Chr2:986473 wgd
Hetu Hetu-Chr2:986473 Hetu2g00104 Hetu-Chr2:3493249 wgd
Hetu Hetu-Chr2:986473 Hetu3g00047 Hetu-Chr3:2518116 wgd
Hetu Hetu-Chr2:986473 Hetu31g02158 Hetu-Chr31:123329499 wgd
Hetu Hetu-Chr2:986473 Hetu32g02164 Hetu-Chr32:125371041 wgd
Hetu Hetu-Chr2:986473 Hetu33g02092 Hetu-Chr33:117752845 wgd
Hetu Hetu-Chr2:986473 Hetu46g01602 Hetu-Chr46:88908748 wgd
Hetu Hetu-Chr2:986473 Hetu47g01534 Hetu-Chr47:93374181 wgd