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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00028 ATGGTTTTTTCTCAATTAACCGCTTTAATGGAAGACAAAACATGCAAACCGTTTGCACCATCCAAGAACTATTTGCACCTCCCGTTAAACCCGCCCGACGCCACGTCAGATAGTTTCGAACTTGATTTCTCCGATACATTTGGTCCTCTACCCACTCACGGAACTTCTGAAATCTCAACCGAAACTATATACGATGACCCGGTGGTCATCTGCAACCGATCACATTCTCTAGTGGGCCCTACGCCACGTGTTAGCCACTTGCTAAACCTAAAGAAGCTAACCATATGTGAAACAGAGGAACTAGAGGATTTTAACGATGTGGCGGTTGAAGGAGTTGAGGAAAGCTGCGAGAAGGTGCAGAGTGTAGGGCTTGAAGATTTCGAGGTTATGAAAGTTGTGGGCCAGGGGGCGTTCGGGAAAGTTTATCAAGTTAGAAAGAAGGATAATTTGGAAATATATGCGATGAAGGTTGTGAGGAAAGATAAGATTGTGGAGAAAAATCATGCGGAGTATATGAAAGCCGAGAGGGATATTCTAACGAAAGTTGATCATCCGTTTATCGTCCAACTCAGATATTCTTTCCAGACTAAGTATAGACTTTACCTTGTGTTGGACTTTGTGAACGGAGGGCATCTCTTTTTCCAGCTCTATCACCATGGGTTGTTTCGTGAGGATCTGGCCCGTATATATGCTGCAGAGATTGTTTCAGCTGTTTCTCACCTTCATGCAAATGGCATAATGCATAGGGATCTTAAGCCAGAAAATATTCTACTTGATGTGGATGGCCATGCTTTGCTTACCGACTTTGGGCTAGCAAAGGAATTTGACGAAAATGCAAGGTCCAATTCTTTATGTGGGACGGTAGAATACATGTCGCCCGAAATTATTCTTGGTAAGGGCCATGATAAGGCTGCGGATTGGTGGAGTGTTGGAATCTTGTTGTTTGAGATGCTCACAGGCCGGCCACCATTTCATGGAGGAAATCGAGAAAAAATCCAGAAAAAGATAGTGAAGGATAAATTAAAGCTACCTGCATTTTTGACAAGCGAAGCACACTGCCTGCTGAAAGGGTTGCTGCAAAAGGATCCAAATAAGAGGCTTGGAAACGGGTCAATGGGAAGCGATGAGATAAAGCATCACAAATGGTTCAAGCCAATAAACTGGAAAAGATTAGACGCTCGAGAAATCCAGCCCACTTTTCGACCCGAAGTTGCAGGAAACCAATGCATTGCTAATTTTGATAAACGTTGGACCGATATGCCGCTATTGGACTCCCCTGCATCTAGCCCAAACGCTTCTGCAAACCTCTTTCAGGGATTTACTTACGTCAAGCCTGCAGCCTCTTTTCTCAGGAGAAACAGCCCGGTCTGCTGA 1374 44.4 MVFSQLTALMEDKTCKPFAPSKNYLHLPLNPPDATSDSFELDFSDTFGPLPTHGTSEISTETIYDDPVVICNRSHSLVGPTPRVSHLLNLKKLTICETEELEDFNDVAVEGVEESCEKVQSVGLEDFEVMKVVGQGAFGKVYQVRKKDNLEIYAMKVVRKDKIVEKNHAEYMKAERDILTKVDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDVDGHALLTDFGLAKEFDENARSNSLCGTVEYMSPEIILGKGHDKAADWWSVGILLFEMLTGRPPFHGGNREKIQKKIVKDKLKLPAFLTSEAHCLLKGLLQKDPNKRLGNGSMGSDEIKHHKWFKPINWKRLDAREIQPTFRPEVAGNQCIANFDKRWTDMPLLDSPASSPNASANLFQGFTYVKPAASFLRRNSPVC 457
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00028 457 SUPERFAMILY Protein kinase-like (PK-like) 124 447 IPR011009 -
Hean1g00028 457 Pfam Protein kinase domain 127 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hean1g00028 457 Gene3D Phosphorylase Kinase; domain 1 124 426 - -
Hean1g00028 457 SMART serkin-6 127 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hean1g00028 457 CDD STKc-AGC 133 383 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Hean1g00028 457 Pfam Protein kinase C terminal domain 406 442 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hean1g00028 457 SMART pkinase-C-6 384 444 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hean1g00028 457 ProSiteProfiles Protein kinase domain profile. 127 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hean1g00028 457 FunFam Non-specific serine-threonine protein kinase 207 402 - -
Hean1g00028 457 ProSitePatterns Protein kinases ATP-binding region signature. 133 160 IPR017441 GO:0005524(InterPro)
Hean1g00028 457 PANTHER RIBOSOMAL PROTEIN S6 KINASE 103 448 - -
Hean1g00028 457 Gene3D Transferase(Phosphotransferase) domain 1 207 402 - -
Hean1g00028 457 ProSitePatterns Serine-Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hean1g00028 457 ProSiteProfiles AGC-kinase C-terminal domain profile. 384 452 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hean1g00028 457 FunFam Non-specific serine-threonine protein kinase 124 230 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00028 K04688 ribosomal protein S6 kinase beta [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3210483 Hean Hean12g01721 Hean-Chr12:44538206 Hean1g00028 Hean-Chr1:1018072
3222697 Hean Hean16g00664 Hean-Chr16:16925838 Hean1g00028 Hean-Chr1:1018072
3228939 Hean Hean1g00028 Hean-Chr1:1018072 Hean5g01576 Hean-Chr5:95971012
3252989 Hean Hean1g00028 Hean-Chr1:1018072 Hean1g00035 Hean-Chr1:1066222
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g02102 . 134 234 AGC Kinase gene family AT5G58140 43.636 1.00e-20 94.7
Hean17g03018 . 100 551 AGC Kinase gene family AT5G47750 83.297 0.0 784.0
Hean16g00664 . 38 461 AGC Kinase gene family AT3G08720 58.891 0.0 517.0
Hean16g02035 . 199 233 AGC Kinase gene family AT3G45780 54.286 3.22e-07 43.9
Hean16g02074 . 1 1294 AGC Kinase gene family AT3G17850 62.136 0.0 1497.0
Hean16g02575 . 88 586 AGC Kinase gene family AT5G47750 81.349 0.0 825.0
Hean15g01291 . 84 578 AGC Kinase gene family AT3G27580 68.155 0.0 680.0
Hean15g01425 . 131 234 AGC Kinase gene family AT5G58140 44.248 7.55e-23 101.0
Hean15g02193 . 88 236 AGC Kinase gene family AT5G47750 73.154 9.42e-59 192.0
Hean15g02929 . 112 555 AGC Kinase gene family AT1G79250 72.197 0.0 650.0
Hean15g03658 . 233 282 AGC Kinase gene family AT3G27580 37.255 1.65e-06 42.0
Hean14g01544 . 333 417 AGC Kinase gene family AT4G26610 90.588 6.95e-52 168.0
Hean14g03051 . 3 451 AGC Kinase gene family AT3G44610 63.675 0.0 555.0
Hean14g03052 . 474 896 AGC Kinase gene family AT3G52890 65.882 0.0 576.0
Hean14g03870 . 362 399 AGC Kinase gene family AT5G09890 63.158 3.84e-10 52.4
Hean13g01286 . 3 451 AGC Kinase gene family AT3G44610 64.847 0.0 545.0
Hean13g02041 . 16 404 AGC Kinase gene family AT1G51170 55.416 2.86e-146 419.0
Hean13g03907 . 1 540 AGC Kinase gene family AT4G14350 81.701 0.0 902.0
Hean13g03917 . 97 241 AGC Kinase gene family AT3G23310 52.414 2.29e-35 125.0
Hean13g03948 . 107 282 AGC Kinase gene family AT4G14350 95.455 7.55e-121 351.0
Hean13g03949 . 345 547 AGC Kinase gene family AT3G23310 73.529 1.21e-114 337.0
Hean13g04141 . 124 765 AGC Kinase gene family AT2G44830 66.465 0.0 830.0
Hean12g00260 . 11 525 AGC Kinase gene family AT2G26700 57.605 0.0 560.0
Hean12g01721 . 27 486 AGC Kinase gene family AT3G10540 77.419 0.0 761.0
Hean12g01880 . 188 233 AGC Kinase gene family AT3G45780 39.13 5.84e-06 40.8
Hean12g01965 . 119 491 AGC Kinase gene family AT5G58140 30.214 1.12e-52 186.0
Hean12g02522 . 196 351 AGC Kinase gene family AT4G14350 86.538 4.43e-97 289.0
Hean12g03584 . 219 275 AGC Kinase gene family AT5G47750 80.702 1.11e-25 96.7
Hean11g00727 . 3 449 AGC Kinase gene family AT3G14370 60.217 0.0 518.0
Hean11g01059 . 378 451 AGC Kinase gene family AT3G44610 62.667 1.12e-23 90.5
Hean11g01359 . 98 586 AGC Kinase gene family AT5G47750 73.428 0.0 733.0
Hean11g04254 . 232 934 AGC Kinase gene family AT3G52890 50.557 0.0 648.0
Hean10g00355 . 1 519 AGC Kinase gene family AT2G20470 77.692 0.0 840.0
Hean10g01368 . 468 641 AGC Kinase gene family AT3G52890 68.75 4.06e-75 241.0
Hean10g01533 . 60 385 AGC Kinase gene family AT3G08730 23.077 1.03e-07 52.4
Hean10g02829 . 10 469 AGC Kinase gene family AT3G14370 63.103 0.0 557.0
Hean10g03192 . 10 518 AGC Kinase gene family AT4G33080 78.906 0.0 833.0
Hean10g03584 . 362 399 AGC Kinase gene family AT5G09890 65.789 2.03e-09 51.6
Hean10g03819 . 11 525 AGC Kinase gene family AT2G26700 58.034 0.0 570.0
Hean9g00890 ACH,WGDA 135 233 AGC Kinase gene family AT5G58140 44.444 3.69e-21 96.3
Hean9g03669 . 10 514 AGC Kinase gene family AT5G09890 74.556 0.0 807.0
Hean9g04118 . 38 459 AGC Kinase gene family AT3G08720 52.693 2.03e-150 434.0
Hean9g04213 . 11 51 AGC Kinase gene family AT5G09890 70.732 5.34e-14 61.6
Hean9g04214 . 90 136 AGC Kinase gene family AT5G09890 74.468 1.56e-17 71.6
Hean9g04215 . 179 241 AGC Kinase gene family AT5G09890 87.302 3.58e-35 121.0
Hean8g01035 . 4 486 AGC Kinase gene family AT3G10540 77.143 0.0 781.0
Hean8g01717 . 30 1159 AGC Kinase gene family AT5G62310 59.095 0.0 1262.0
Hean8g01811 . 333 417 AGC Kinase gene family AT4G26610 84.706 2.97e-45 150.0
Hean8g02679 . 9 360 AGC Kinase gene family AT4G13000 58.038 8.12e-147 419.0
Hean8g02840 . 110 586 AGC Kinase gene family AT5G47750 77.778 0.0 762.0
Hean7g00821 . 10 360 AGC Kinase gene family AT4G13000 60.556 1.18e-150 428.0
Hean7g00885 . 47 910 AGC Kinase gene family AT5G58140 70.412 0.0 1263.0
Hean7g01769 . 71 451 AGC Kinase gene family AT3G44610 56.995 4.36e-154 442.0
Hean7g02199 . 4 391 AGC Kinase gene family AT1G51170 57.576 1.52e-151 434.0
Hean7g02304 . 344 398 AGC Kinase gene family AT3G08720 45.455 1.44e-08 47.4
Hean7g02313 . 3 451 AGC Kinase gene family AT3G44610 61.623 0.0 531.0
Hean7g02401 . 98 544 AGC Kinase gene family AT5G47750 69.67 0.0 619.0
Hean7g02479 . 20 499 AGC Kinase gene family AT5G40030 69.495 0.0 683.0
Hean6g00265 . 891 1164 AGC Kinase gene family AT5G62310 61.348 2.00e-111 345.0
Hean6g00266 . 700 893 AGC Kinase gene family AT5G62310 74.634 9.04e-100 311.0
Hean6g00267 . 142 644 AGC Kinase gene family AT5G62310 44.181 2.30e-122 382.0
Hean6g00521 . 68 765 AGC Kinase gene family AT2G44830 63.803 0.0 828.0
Hean6g00994 . 5 373 AGC Kinase gene family AT3G25250 59.786 2.05e-156 446.0
Hean6g02101 ACH 135 233 AGC Kinase gene family AT5G58140 45.37 3.42e-21 96.7
Hean5g01449 . 1 1288 AGC Kinase gene family AT3G17850 63.125 0.0 1483.0
Hean5g01576 . 1 465 AGC Kinase gene family AT3G08720 66.667 0.0 627.0
Hean5g02213 . 135 406 AGC Kinase gene family AT3G08720 37.226 2.73e-46 172.0
Hean5g02215 . 129 373 AGC Kinase gene family AT3G08730 34.05 4.79e-41 155.0
Hean5g02702 . 398 997 AGC Kinase gene family AT1G45160 61.075 0.0 748.0
Hean5g03457 . 110 586 AGC Kinase gene family AT5G47750 77.755 0.0 766.0
Hean4g02190 . 18 996 AGC Kinase gene family AT3G45780 68.102 0.0 1344.0
Hean4g02486 . 5 373 AGC Kinase gene family AT3G25250 61.29 3.56e-160 454.0
Hean4g02685 . 1 516 AGC Kinase gene family AT2G20470 78.764 0.0 845.0
Hean4g02854 . 9 438 AGC Kinase gene family AT2G34650 60.613 0.0 527.0
Hean4g04436 . 344 416 AGC Kinase gene family AT4G26610 94.521 6.45e-46 151.0
Hean3g00072 . 42 135 AGC Kinase gene family AT2G20470 76.596 1.64e-43 147.0
Hean3g00134 . 40 263 AGC Kinase gene family AT5G04510 23.013 4.83e-09 58.5
Hean3g00841 WGDA 135 259 AGC Kinase gene family AT5G58140 40.299 2.47e-21 97.1
Hean3g01808 . 155 187 AGC Kinase gene family AT5G04510 60.606 6.25e-11 53.5
Hean3g04080 . 1 538 AGC Kinase gene family AT4G14350 82.004 0.0 904.0
Hean3g04264 . 81 765 AGC Kinase gene family AT2G44830 66.043 0.0 863.0
Hean2g00175 . 404 578 AGC Kinase gene family AT3G27580 73.714 2.45e-82 259.0
Hean2g00695 . 393 457 AGC Kinase gene family AT1G03920 66.154 3.19e-25 94.7
Hean2g02203 . 334 398 AGC Kinase gene family AT3G08720 53.03 1.50e-14 65.5
Hean2g02895 . 3 451 AGC Kinase gene family AT3G44610 64.655 0.0 557.0
Hean2g03066 . 13 404 AGC Kinase gene family AT1G51170 54.5 4.87e-147 421.0
Hean1g00028 . 1 468 AGC Kinase gene family AT3G08720 67.511 0.0 645.0
Hean1g01093 . 57 121 AGC Kinase gene family AT5G09890 64.615 8.95e-23 88.6
Hean1g01232 . 18 996 AGC Kinase gene family AT3G45780 68.664 0.0 1366.0
Hean1g01386 . 188 233 AGC Kinase gene family AT3G45780 41.304 1.32e-07 43.9
Hean1g02458 . 88 272 AGC Kinase gene family AT5G47750 74.595 1.94e-79 247.0
Hean1g03518 . 378 934 AGC Kinase gene family AT3G52890 61.36 0.0 669.0
Hean1g03520 . 378 934 AGC Kinase gene family AT3G52890 61.36 0.0 669.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean Pkinase 1.2e-73 CL0016 PK AGC-Pl