AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00024 ATGAGTACGAACAACCTACAATCATGCAAAAGAAAAATGTTTTTACATGGCCATGGACGACAAAGTACTTCTATTGATGATCTTGGTCTTGACATTCTTGTGTATGAGATATTAATAAGGCTTCCTGCAAAGGGTGTGGGTCGGTCAAAGTGTGTATGCAAGGAATGGTTATCTGTTCTATCGACACATCATTTTGCTATGATGCATTGTCGTCACATATCTACATCCTATAACCAGAAATTTATAGCAATTGGTTCGCATTTATGTTCTGTATTCCCCCTTTCGTGTGAAGATTCATGTCCATTATTAAACTCCAAAATCTTACTTCCATTTGAAGCGCCTTGGAATAAAGTAAATATTCTAACAAGTTTTGAAGGATTGTTATGTGTTTGTTTTCGTAATACTGGCAAATTGGTTATTTGGAATCCATTAACTCGTGCACTTAAAGAGATGTCCAGCTCAAATAGTCGTGGTTTATATAAACCTAAGTCAGATGCAATTGGGTTGTATGTGGATAAGACGGATGACTACAAGCTTTTACACATAAAGCGTAGGCGTGGTAGAATGTGGGTTCATGTATATTCAAGTATGTTTGACTCGTGGCACAAAATCACTTTTGCAAATAAACTTCGTTGCTGGCGTGGAAAACTTATTTGGTCTAATGGAACTTTTTGCAAAGGTGTTTTATATTTTTTGGTTAACTGTTTTATTGAGAATAAGGGTGTTATGTTGTTTGGCTTTGATGTGGAATCAGAGAGATTTAGGTTGAAAACCTTTCCAAGATTTCCACATGCTTACTATGATGGAAATTTAGTTGTTTTTCATAAAGAGCTTCATATGTTTGTTACTCATGGGCTTCCTAATTGGACGGTTGATTTGTGGAGGATGGAAGGTGAAAGTTGGGTGAAATTATGGGTTTTTCCTCGCATACAGCCTCCTATTATTTTATCATGCTCTATTACACATATTACAAGTACTGGCAGGTTTCTTGTCGTATCGAATGATGGAGTTGCTAATGAAATTGACACGACAAAGAAAGGGGATGATTGTTTCTTACCTTTAGTTTGGTTTCACGGGTTACAAGGAGCAATATATACCGAGACTCTTTCTTCACCAGATTTTTATTTCGATTAA 1134 36.24 MSTNNLQSCKRKMFLHGHGRQSTSIDDLGLDILVYEILIRLPAKGVGRSKCVCKEWLSVLSTHHFAMMHCRHISTSYNQKFIAIGSHLCSVFPLSCEDSCPLLNSKILLPFEAPWNKVNILTSFEGLLCVCFRNTGKLVIWNPLTRALKEMSSSNSRGLYKPKSDAIGLYVDKTDDYKLLHIKRRRGRMWVHVYSSMFDSWHKITFANKLRCWRGKLIWSNGTFCKGVLYFLVNCFIENKGVMLFGFDVESERFRLKTFPRFPHAYYDGNLVVFHKELHMFVTHGLPNWTVDLWRMEGESWVKLWVFPRIQPPIILSCSITHITSTGRFLVVSNDGVANEIDTTKKGDDCFLPLVWFHGLQGAIYTETLSSPDFYFD 377
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00024 377 NCBIfam F-box protein interaction domain 123 335 IPR017451 -
Hean1g00024 377 PANTHER BNACNNG10540D PROTEIN 33 304 IPR050796 -
Hean1g00024 377 SUPERFAMILY F-box domain 21 93 IPR036047 GO:0005515(InterPro)
Hean1g00024 377 SUPERFAMILY Galactose oxidase, central domain 54 334 IPR011043 -
Hean1g00024 377 Pfam F-box associated domain 223 333 IPR013187 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00024 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3228937 Hean Hean1g00024 Hean-Chr1:918357 Hean7g00067 Hean-Chr7:3184624
3248737 Hean Hean9g00749 Hean-Chr9:40114276 Hean1g00024 Hean-Chr1:918357
3269433 Hean Hean1g00024 Hean-Chr1:918357 Hean11g00798 Hean-Chr11:18311661