AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Taer4g02307 | ATGGTTTTTTCTCAATTAACCGCTTTAATGGAAGACAAAACATGCAAATCACCCAAGAATTATTTACACTTCCCTTTGAACCCTCCCGATGCCACATCGGATAATATTGAACTCGATTTTTCTGACACATTTGGTCCTCTACCAGCTCATGGAAATTCTGAAATTTCACGCGAAACTATATTTGATGACCCTGTTGTCATATGTAACCGATCACATTCTTTAGTGGGCCCCACACCACGTGTTAGTCACTTGCTAAATCTAAAGAAGCTAACCATATGTGAAACCGAGGAGTTAGAGGATTTTAAGGATTTGGTAGTTGAAGAAGTTGAGGAAAGTTGTGAGAAGGTGGAGAGTGTCGGGCTTGAAGATTTCGAGGTTATGAAAGTCGTGGGACAGGGGGCGTTTGGGAAAGTATACCAAGTTAGAAAGAAAGATAATTTGGAAATATATGCAATGAAGGTTGTGAGGAAAGATAAGATTGTGGAGAAAAACCATGCTGAATATATGAAAGCTGAGAGGGATATTTTGACAAAGATTGATCATCCTTACATAGTCCAACTCAGATATTCTTTCCAGACCAAATATAGACTTTACCTTGTTTTGGACTTTGTGAACGGAGGGCATCTCTTTTTCCAGCTCTATCATCATGGGCTGTTTCGCGAGGATCTGGCTCGCATTTATGCTGCAGAGATTGTTTCAGCTGTTTCTCATCTTCATGCAAATGGCATAATGCATAGGGATCTTAAGCCTGAAAATATTCTACTTGATGTGGATGGCCATGCTTTGCTTACCGACTTTGGGCTAGCAAAAGAATTCGACGAAAATGCAAGATCAAACTCTTTATGTGGGACAGTAGAGTACATGTCGCCTGAAATTATTCTCGGCAAGGGTCATGATAAGGCTGCAGATTGGTGGAGTGTAGGAATTTTGTTGTTTGAGATGCTCACAGGACAGCCACCGTTTCATGGAGGTAACCGAGATAAAATACAGAAGAAGATTGTGAAGGATAAATTAAAGCTACCTGCATTTTTGACAAGTGAAGCACACTGCCTGCTGAAAGGGTTGCTGCAAAAGGATCCAAGCAAAAGGCTTGGAAATGGGTCAAAGGGAAGTGATGAAATAAAGCATCATAAGTGGTTCAAGCCAATCAACTGGAGAAAGTTAGATGCTCGAGAAATCCAGCCCAGTTTTCGGCCTCAAGTTGCAGGAACTCAATGCATTGCTAATTTTGATAAACGTTGGACCGATATGTCGTTATTGGACTCCCCTGCTTCCAGCCCCGATGCATCTGCAAACCTATTTCAAGGTTTTACTTATGTCAGGCCGGCAGCCTCTTTTCTTAGGAGACACAGCCCGGTCTGCTGA | 1365 | 41.83 | MVFSQLTALMEDKTCKSPKNYLHFPLNPPDATSDNIELDFSDTFGPLPAHGNSEISRETIFDDPVVICNRSHSLVGPTPRVSHLLNLKKLTICETEELEDFKDLVVEEVEESCEKVESVGLEDFEVMKVVGQGAFGKVYQVRKKDNLEIYAMKVVRKDKIVEKNHAEYMKAERDILTKIDHPYIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDVDGHALLTDFGLAKEFDENARSNSLCGTVEYMSPEIILGKGHDKAADWWSVGILLFEMLTGQPPFHGGNRDKIQKKIVKDKLKLPAFLTSEAHCLLKGLLQKDPSKRLGNGSKGSDEIKHHKWFKPINWRKLDAREIQPSFRPQVAGTQCIANFDKRWTDMSLLDSPASSPDASANLFQGFTYVRPAASFLRRHSPVC* | 455 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Taer4g02307 | 454 | SUPERFAMILY | Protein kinase-like (PK-like) | 121 | 445 | IPR011009 | - | |
| Taer4g02307 | 454 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 381 | 449 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Taer4g02307 | 454 | CDD | STKc-AGC | 130 | 380 | IPR045270 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
| Taer4g02307 | 454 | Gene3D | Phosphorylase Kinase; domain 1 | 121 | 421 | - | - | |
| Taer4g02307 | 454 | FunFam | Non-specific serine-threonine protein kinase | 121 | 227 | - | - | |
| Taer4g02307 | 454 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 243 | 255 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Taer4g02307 | 454 | ProSitePatterns | Protein kinases ATP-binding region signature. | 130 | 157 | IPR017441 | GO:0005524(InterPro) | |
| Taer4g02307 | 454 | SMART | serkin-6 | 124 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Taer4g02307 | 454 | Pfam | Protein kinase domain | 124 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Taer4g02307 | 454 | ProSiteProfiles | Protein kinase domain profile. | 124 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Taer4g02307 | 454 | FunFam | Non-specific serine-threonine protein kinase | 204 | 399 | - | - | |
| Taer4g02307 | 454 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 100 | 445 | - | - | |
| Taer4g02307 | 454 | SMART | pkinase-C-6 | 381 | 441 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Taer4g02307 | 454 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 399 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Taer4g02307 | K04688 | ribosomal protein S6 kinase beta [EC:2.7.11.1] |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 5242939 | Taer | Taer11g01167 | Taer-Chr11:15142842 | Taer4g02307 | Taer-Chr4:52948860 | |
| 5251275 | Taer | Taer2g02967 | Taer-Chr2:101609414 | Taer4g02307 | Taer-Chr4:52948860 | |
| 5254768 | Taer | Taer4g02307 | Taer-Chr4:52948860 | Taer7g03159 | Taer-Chr7:37437838 | |
| 5272106 | Taer | Taer4g02307 | Taer-Chr4:52948860 | Taer8g01597 | Taer-Chr8:56348270 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Taer1g00793 | ACH,WGDA | 134 | 346 | AGC Kinase gene family | AT3G08730 | 24.681 | 1.65e-08 | 55.8 | |
| Taer1g00849 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 63.158 | 0.0 | 528.0 | |
| Taer1g00940 | . | 18 | 404 | AGC Kinase gene family | AT1G51170 | 56.709 | 1.63e-150 | 429.0 | |
| Taer1g01344 | . | 121 | 586 | AGC Kinase gene family | AT5G47750 | 79.618 | 0.0 | 758.0 | |
| Taer1g02748 | . | 8 | 384 | AGC Kinase gene family | AT3G25250 | 57.632 | 8.35e-148 | 423.0 | |
| Taer1g03364 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.013 | 5.62e-10 | 61.6 | |
| Taer1g05248 | . | 46 | 910 | AGC Kinase gene family | AT5G58140 | 72.064 | 0.0 | 1255.0 | |
| Taer1g05531 | . | 10 | 449 | AGC Kinase gene family | AT3G14370 | 60.532 | 0.0 | 539.0 | |
| Taer1g06027 | . | 110 | 586 | AGC Kinase gene family | AT5G47750 | 71.281 | 0.0 | 689.0 | |
| Taer1g06652 | . | 84 | 499 | AGC Kinase gene family | AT5G40030 | 77.336 | 0.0 | 676.0 | |
| Taer1g06723 | . | 80 | 578 | AGC Kinase gene family | AT3G27580 | 64.865 | 0.0 | 646.0 | |
| Taer2g00223 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 62.462 | 0.0 | 1494.0 | |
| Taer2g01502 | . | 112 | 555 | AGC Kinase gene family | AT1G79250 | 71.586 | 0.0 | 653.0 | |
| Taer2g02672 | . | 5 | 239 | AGC Kinase gene family | AT5G09890 | 54.331 | 6.71e-82 | 252.0 | |
| Taer2g02673 | . | 334 | 504 | AGC Kinase gene family | AT5G09890 | 69.591 | 2.46e-88 | 266.0 | |
| Taer2g02967 | . | 23 | 459 | AGC Kinase gene family | AT3G08720 | 58.278 | 0.0 | 515.0 | |
| Taer3g00121 | . | 16 | 408 | AGC Kinase gene family | AT3G20830 | 55.831 | 1.73e-143 | 412.0 | |
| Taer3g01162 | . | 601 | 674 | AGC Kinase gene family | AT3G52890 | 37.179 | 1.32e-06 | 47.4 | |
| Taer4g00073 | . | 231 | 934 | AGC Kinase gene family | AT3G52890 | 50.557 | 0.0 | 651.0 | |
| Taer4g01227 | . | 73 | 996 | AGC Kinase gene family | AT3G45780 | 70.0 | 0.0 | 1311.0 | |
| Taer4g02243 | . | 269 | 345 | AGC Kinase gene family | AT4G33080 | 42.857 | 1.45e-11 | 61.6 | |
| Taer4g02307 | . | 1 | 466 | AGC Kinase gene family | AT3G08720 | 68.376 | 0.0 | 647.0 | |
| Taer4g03002 | . | 4 | 996 | AGC Kinase gene family | AT3G45780 | 69.374 | 0.0 | 1362.0 | |
| Taer4g03190 | . | 131 | 379 | AGC Kinase gene family | AT3G08720 | 28.195 | 4.24e-24 | 98.6 | |
| Taer5g00662 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 44.545 | 4.09e-22 | 99.4 | |
| Taer5g00728 | . | 84 | 578 | AGC Kinase gene family | AT3G27580 | 70.553 | 0.0 | 680.0 | |
| Taer5g01177 | . | 118 | 879 | AGC Kinase gene family | AT5G58140 | 76.714 | 0.0 | 1219.0 | |
| Taer5g01620 | . | 87 | 586 | AGC Kinase gene family | AT5G47750 | 81.782 | 0.0 | 831.0 | |
| Taer5g02309 | . | 135 | 327 | AGC Kinase gene family | AT3G08720 | 29.897 | 1.70e-20 | 85.5 | |
| Taer5g02582 | . | 133 | 373 | AGC Kinase gene family | AT3G08730 | 37.86 | 8.91e-50 | 172.0 | |
| Taer7g00397 | . | 12 | 518 | AGC Kinase gene family | AT4G33080 | 78.039 | 0.0 | 825.0 | |
| Taer7g00656 | . | 1 | 525 | AGC Kinase gene family | AT2G26700 | 58.041 | 0.0 | 568.0 | |
| Taer7g01778 | . | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 7.32e-21 | 95.5 | |
| Taer7g02200 | . | 75 | 765 | AGC Kinase gene family | AT2G44830 | 65.186 | 0.0 | 857.0 | |
| Taer7g02298 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 81.818 | 0.0 | 903.0 | |
| Taer7g02830 | . | 135 | 331 | AGC Kinase gene family | AT3G08720 | 23.684 | 2.49e-07 | 51.2 | |
| Taer7g03159 | . | 1 | 491 | AGC Kinase gene family | AT5G04510 | 74.545 | 0.0 | 754.0 | |
| Taer8g01597 | . | 30 | 1162 | AGC Kinase gene family | AT5G62310 | 58.491 | 0.0 | 1263.0 | |
| Taer10g00122 | . | 30 | 1162 | AGC Kinase gene family | AT5G62310 | 55.279 | 0.0 | 1189.0 | |
| Taer10g00929 | . | 474 | 934 | AGC Kinase gene family | AT3G52890 | 61.688 | 0.0 | 574.0 | |
| Taer10g00931 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 61.505 | 0.0 | 520.0 | |
| Taer11g00254 | . | 90 | 586 | AGC Kinase gene family | AT5G47750 | 75.197 | 0.0 | 754.0 | |
| Taer11g00822 | . | 1 | 991 | AGC Kinase gene family | AT1G45160 | 49.161 | 0.0 | 926.0 | |
| Taer11g01167 | . | 135 | 379 | AGC Kinase gene family | AT3G08720 | 38.462 | 4.14e-47 | 174.0 | |
| Taer11g01170 | . | 129 | 373 | AGC Kinase gene family | AT3G08730 | 34.677 | 7.20e-43 | 160.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Taer | Pkinase | 1.1e-73 | CL0016 | PK | AGC-Pl |