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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00895 ATGGGACTTTGCTGCTTCTCCTCGACGCCGACCGATGAAGAAGAGATCGATAGTCATCCTGAGTTTGCAGGGGGTAATGTGACTCTCATCACTACCAAGAGTGCTTGGGACCAAAAGCTGTCAGAAGCAAAGATTCAAGGCAAAGTAGTGATTGCCAACTTCAGTGCAACTTGGTGTGGTCCATGCAAATCAATTGCACCACACTACGTTGAGCTATCAGAGAAGTATCCGTCTCTTATGTTCCTGACCATTGACGTTGATGAACTAACGGAGTTTAGCACAGAAATGGATGTAAAAGCTACTCCAACATTCTTCTTCTTTAGAGATGGTAAACAGATTGATAAACTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCGCAATTGTTGATTCACAGGTCCCCACTGGTCAGAAGTAA 426 44.37 MGLCCFSSTPTDEEEIDSHPEFAGGNVTLITTKSAWDQKLSEAKIQGKVVIANFSATWCGPCKSIAPHYVELSEKYPSLMFLTIDVDELTEFSTEMDVKATPTFFFFRDGKQIDKLVGANKPELQKKITAIVDSQVPTGQK 141
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00895 141 PANTHER THIOREDOXIN 25 130 IPR050620 -
Fli3g00895 141 PRINTS Thioredoxin family signature 97 108 - -
Fli3g00895 141 PRINTS Thioredoxin family signature 58 67 - -
Fli3g00895 141 PRINTS Thioredoxin family signature 50 58 - -
Fli3g00895 141 ProSiteProfiles Thioredoxin domain profile. 13 133 IPR013766 -
Fli3g00895 141 SUPERFAMILY Thioredoxin-like 23 132 IPR036249 -
Fli3g00895 141 Gene3D Glutaredoxin 1 139 - -
Fli3g00895 141 ProSitePatterns Thioredoxin family active site. 51 69 IPR017937 -
Fli3g00895 141 Pfam Thioredoxin 28 129 IPR013766 -
Fli3g00895 141 CDD TRX-family 40 128 - -
Fli3g00895 141 FunFam Thioredoxin 24 133 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00895 K03671 thioredoxin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2370499 Fli Fli3g00895 Fli-Chr3:24852259 Fli6g01449 Fli-Chr6:76210799
2388576 Fli Fli3g00895 Fli-Chr3:24852259 Fli1g01185 Fli-Chr1:40100032