AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso28g00524 | ATGGGACTTTGCTTCTCGTCAACTCCAACTGATGAAGATGAGTCCGAGAGTCATGCTCAGTTTGAGGGAGGTAATGTGACTCTCATCACTACCAAGAATGCTTGGGACGAAAAGCTGTCAGAAGCGAAGACTCAAGGCAAAGTAGTGATTGCCAACTTCAGTGCATCTTGGTGTGGTCCATGCAAAGCAATTGCACCGCACTACGTTGAGCTGTCAGAGAAGTATCCTTCTCTTATGTTTCTGACCATAGACGTTGATGAATTAACGGATTTTAGCACACAATTGGAAGTAAAGGCTACTCCAACATTCTTCTTCTTTAAAAATGGTCAACAGATTGACAGGCTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCACCATTGTTGATTCACAGGTCCCCACTGCTCACAAGTAA | 423 | 44.21 | MGLCFSSTPTDEDESESHAQFEGGNVTLITTKNAWDEKLSEAKTQGKVVIANFSASWCGPCKAIAPHYVELSEKYPSLMFLTIDVDELTDFSTQLEVKATPTFFFFKNGQQIDRLVGANKPELQKKITTIVDSQVPTAHK | 140 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso28g00524 | 140 | Pfam | Thioredoxin | 27 | 128 | IPR013766 | - | |
| Smso28g00524 | 140 | FunFam | Thioredoxin | 23 | 132 | - | - | |
| Smso28g00524 | 140 | PRINTS | Thioredoxin family signature | 49 | 57 | - | - | |
| Smso28g00524 | 140 | PRINTS | Thioredoxin family signature | 96 | 107 | - | - | |
| Smso28g00524 | 140 | PRINTS | Thioredoxin family signature | 57 | 66 | - | - | |
| Smso28g00524 | 140 | PANTHER | THIOREDOXIN | 22 | 129 | IPR050620 | - | |
| Smso28g00524 | 140 | SUPERFAMILY | Thioredoxin-like | 21 | 130 | IPR036249 | - | |
| Smso28g00524 | 140 | ProSitePatterns | Thioredoxin family active site. | 50 | 68 | IPR017937 | - | |
| Smso28g00524 | 140 | ProSiteProfiles | Thioredoxin domain profile. | 20 | 132 | IPR013766 | - | |
| Smso28g00524 | 140 | Gene3D | Glutaredoxin | 1 | 138 | - | - | |
| Smso28g00524 | 140 | CDD | TRX-family | 37 | 127 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso28g00524 | K03671 | thioredoxin |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 337965 | Smso28g00524 | Smso1g03556 | |
| 357522 | Smso1g03556 | Smso28g00524 | |
| 429016 | Smso1g03556 | Smso28g00524 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 4985000 | Smso | Smso28g00524 | Smso-Chr28:14769470 | Smso28g00933 | Smso-Chr28:46253407 | |
| 5011821 | Smso | Smso16g01341 | Smso-Chr16:72091794 | Smso28g00524 | Smso-Chr28:14769470 | |
| 5022573 | Smso | Smso3g00972 | Smso-Chr3:25711603 | Smso28g00524 | Smso-Chr28:14769470 | |
| 5022616 | Smso | Smso3g02055 | Smso-Chr3:107162222 | Smso28g00524 | Smso-Chr28:14769470 | |
| 5027937 | Smso | Smso1g03556 | Smso-Chr1:120503877 | Smso28g00524 | Smso-Chr28:14769470 | |
| 5077998 | Smso | Smso20g01802 | Smso-Chr20:61092010 | Smso28g00524 | Smso-Chr28:14769470 | |
| 5096041 | Smso | Smso28g00524 | Smso-Chr28:14769470 | Smso29g01572 | Smso-Chr29:42729654 |