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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01814 ATGGGAATTTGCTTCTCGTCGACTCGGGCTGATGAAGAGGAGACCAACATTCATACTGAGTTTGCCGGAGGTAATGTGACTCTCATCACTACCAAGAATGCTTGGGACCAAAAGCTGTCAGAAGCAAAGACTCAAGGCAAAATAGTGGTTGGCAACTTCAGTGCATCTTGGTGTGGTCCATGCAAATCAATGGCACCCCACTACATTGAGCTATCAGAGAAGTATCCTTCTCTTATGTTTTTGACCGTAGACGTTGATGAATTAAAGGACTTTAGCACACAAATGGATGTAAAGGCAACCCCAACATTCTTCTTCTTTAAAGATGGTCAACAATTTGATAAACTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCTCCATTGTTGATTCACAACCCCCCACTGCTGATAAGTAA 423 43.03 MGICFSSTRADEEETNIHTEFAGGNVTLITTKNAWDQKLSEAKTQGKIVVGNFSASWCGPCKSMAPHYIELSEKYPSLMFLTVDVDELKDFSTQMDVKATPTFFFFKDGQQFDKLVGANKPELQKKITSIVDSQPPTADK 140
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01814 140 SUPERFAMILY Thioredoxin-like 21 132 IPR036249 -
Dapi4g01814 140 PRINTS Thioredoxin family signature 57 66 - -
Dapi4g01814 140 PRINTS Thioredoxin family signature 96 107 - -
Dapi4g01814 140 PRINTS Thioredoxin family signature 49 57 - -
Dapi4g01814 140 Pfam Thioredoxin 27 128 IPR013766 -
Dapi4g01814 140 CDD TRX-family 39 127 - -
Dapi4g01814 140 ProSiteProfiles Thioredoxin domain profile. 20 132 IPR013766 -
Dapi4g01814 140 FunFam Thioredoxin 23 132 - -
Dapi4g01814 140 PANTHER THIOREDOXIN 24 129 IPR050620 -
Dapi4g01814 140 Gene3D Glutaredoxin 1 138 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01814 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
249061 Dapi31g02037 Dapi4g01814
260251 Dapi20g01751 Dapi4g01814
264854 Dapi4g01814 Dapi20g01751
385551 Dapi20g01751 Dapi4g01814
390169 Dapi31g02037 Dapi4g01814
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1918334 Dapi Dapi23g01136 Dapi-Chr23:44032603 Dapi4g01814 Dapi-Chr4:114724220
1941171 Dapi Dapi4g01814 Dapi-Chr4:114724220 Dapi7g01133 Dapi-Chr7:40256964
2026259 Dapi Dapi20g01751 Dapi-Chr20:105949536 Dapi4g01814 Dapi-Chr4:114724220
2049494 Dapi Dapi31g02037 Dapi-Chr31:100898564 Dapi4g01814 Dapi-Chr4:114724220