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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00526 ATGCTAACAGTTCAATCTCCGGCCACCGGAAACCACCTCCCCCGGCCAAAAACCGGCCGCCGGCCTCTTCAACCTATCAGATCCCCAACCAATCTACCACCTCCACCGATCAACAACAGCTTCCAAAAGCCACATCTAAAGCTCGCATCCATCCAGATCTGCGAAGATTTCAACAAAGAGAATCCAAATCCAAATCCAAATCAGAATCAGAATGATAAACTTCTTGATCAAAACCGTTCTTCGATCTACGATGTTGCCGCTGCTCCTGTGCAGATAGAGCAATTTGAAGTCTCGTTGGCGGACGAGCTGAGCGCGATCCGGGAAAAGATGGAGCGATTGAGAGCGGACAGAGAGAGAACGGAGAAGATGCTGAGAGAGAGGGACATAATGATGGAGATGAAGATGAAGGAGCTCGATCGGAGAGGTGAGATCCAGAAGGTGCTCGAGATCGAAGTTGATCGGCTGTATCGGTTAAATGAGCTCCGATCGTTATGCAATAGGATATTGCCGATTAGGTCGTTGAGAGAGAAGGAGCTAGAGAAGATTAAACCGGATAACTGA 561 48.66 MLTVQSPATGNHLPRPKTGRRPLQPIRSPTNLPPPPINNSFQKPHLKLASIQICEDFNKENPNPNPNQNQNDKLLDQNRSSIYDVAAAPVQIEQFEVSLADELSAIREKMERLRADRERTEKMLRERDIMMEMKMKELDRRGEIQKVLEIEVDRLYRLNELRSLCNRILPIRSLREKELEKIKPDN 186
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00526 186 Coils Coil 96 123 - -
Smso28g00526 186 MobiDBLite consensus disorder prediction 1 42 - -
Smso28g00526 186 PANTHER MYELIN TRANSCRIPTION FACTOR 1 184 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00526 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337964 Smso28g00526 Smso1g03553
357523 Smso1g03553 Smso28g00526
429014 Smso1g03553 Smso28g00526
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4978288 Smso Smso25g00096 Smso-Chr25:2063808 Smso28g00526 Smso-Chr28:14841807
5027935 Smso Smso1g03553 Smso-Chr1:120463492 Smso28g00526 Smso-Chr28:14841807
5077997 Smso Smso20g01801 Smso-Chr20:61083958 Smso28g00526 Smso-Chr28:14841807
5096042 Smso Smso28g00526 Smso-Chr28:14841807 Smso29g01571 Smso-Chr29:42722629