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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr07g04621 ATGGGACTTTGCTTCTCTTCGACTAAGGATGATGAAGAACCTGCCTATCATCCTCATTTTACGGGAGGTAAAGTCACCGTTATCACTACCAAGGATGCTTGGAACCAAAAGCTCTCGGAAGCAAAGACTCAAAGCAAAATAGTGATCGCTAACTTTAGTGCATCTTGGTGTGGTCCATGCAAATCGATTTCAACATTATATATTGAGCTTTCCGAGAAGCATCCCTCTCTTATGTTTCTGACCATAGACGTTGATGAATTACCGGAGTTAAGCACACAATGGGATGTAAAAGCTACTCCAACATTCTTCTTCCTTAAAGATGGGCAACAAATCGATAAAGTTGTGGGTGCCAACAAGCCCGAAGTGCAGGAAAAGATAGCCGCCATAGTCGGTTCAAAAGTCCCAGGTGATCATCAAAAGTAA 423 42.55 MGLCFSSTKDDEEPAYHPHFTGGKVTVITTKDAWNQKLSEAKTQSKIVIANFSASWCGPCKSISTLYIELSEKHPSLMFLTIDVDELPELSTQWDVKATPTFFFLKDGQQIDKVVGANKPEVQEKIAAIVGSKVPGDHQK 140
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr07g04621 140 PANTHER THIOREDOXIN 23 128 IPR050620 -
Amtr07g04621 140 SUPERFAMILY Thioredoxin-like 21 128 IPR036249 -
Amtr07g04621 140 Pfam Thioredoxin 26 125 IPR013766 -
Amtr07g04621 140 CDD TRX-family 38 127 - -
Amtr07g04621 140 Gene3D Glutaredoxin 2 136 - -
Amtr07g04621 140 ProSitePatterns Thioredoxin family active site. 49 67 IPR017937 -
Amtr07g04621 140 ProSiteProfiles Thioredoxin domain profile. 7 131 IPR013766 -
Amtr07g04621 140 FunFam Thioredoxin 22 131 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr07g04621 K03671 thioredoxin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
206146 Amtr Amtr03g04800 Amtr-Chr3:103318809 Amtr07g04621 Amtr-Chr7:98168498
208177 Amtr Amtr03g07152 Amtr-Chr3:165794580 Amtr07g04621 Amtr-Chr7:98168498
214126 Amtr Amtr05g00342 Amtr-Chr5:5725642 Amtr07g04621 Amtr-Chr7:98168498
228555 Amtr Amtr07g04621 Amtr-Chr7:98168498 Amtr10g00117 Amtr-Chr10:2543536
297235 Amtr Amtr12g00252 Amtr-Chr12:7838439 Amtr07g04621 Amtr-Chr7:98168498