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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02310 ATGGGGATTTGCTTCTCGTCGACTCCGGCTGATGATGATGAGTCCGATAGTCATGCTCATTTTGCGGGAGGTAATGTGACTCTCATCACTACTAAGAATGCCTGGGACCAAAAGCTGGCAGAAGCAAAGACTGAAGGCAAAGTAGTGATTGCCAACTTCAGTGCAACTTGGTGTGGTCCTTGCAAATCAATTGCACCGCACTACGTTGAGCTATCAGAGAAGTATCCTTCTCTTATGTTTCTGACCGTAGATGTTGATGAGTTAACGGAGTTTAGCACACAATTGGATGTGAAAGCTACTCCAACATTCTTCTTCTTTAAAGATGGTAAAGAGATTGATAAACTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCGCCATTGTTGATTCACAGGTTCCCACTGGTCACAAGTAA 423 43.97 MGICFSSTPADDDESDSHAHFAGGNVTLITTKNAWDQKLAEAKTEGKVVIANFSATWCGPCKSIAPHYVELSEKYPSLMFLTVDVDELTEFSTQLDVKATPTFFFFKDGKEIDKLVGANKPELQKKITAIVDSQVPTGHK* 141
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02310 140 Gene3D Glutaredoxin 1 138 - -
Taer4g02310 140 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Taer4g02310 140 CDD TRX-family 39 127 - -
Taer4g02310 140 Pfam Thioredoxin 27 128 IPR013766 -
Taer4g02310 140 ProSiteProfiles Thioredoxin domain profile. 20 132 IPR013766 -
Taer4g02310 140 SUPERFAMILY Thioredoxin-like 23 131 IPR036249 -
Taer4g02310 140 PRINTS Thioredoxin family signature 57 66 - -
Taer4g02310 140 PRINTS Thioredoxin family signature 49 57 - -
Taer4g02310 140 PRINTS Thioredoxin family signature 96 107 - -
Taer4g02310 140 PANTHER THIOREDOXIN 24 129 IPR050620 -
Taer4g02310 140 FunFam Thioredoxin 23 132 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02310 K03671 thioredoxin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5254770 Taer Taer4g02310 Taer-Chr4:53014744 Taer5g03340 Taer-Chr5:84894565
5268008 Taer Taer10g01089 Taer-Chr10:8040707 Taer4g02310 Taer-Chr4:53014744
5270896 Taer Taer2g01730 Taer-Chr2:91743262 Taer4g02310 Taer-Chr4:53014744
5288687 Taer Taer4g00807 Taer-Chr4:6123528 Taer4g02310 Taer-Chr4:53014744