AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02023 ATGGGACTTTGCTGCTTCTCCTCGACGCCGACTGATGAAGAAGAGACCGATAGTCATCCTGAGTTTGCAGGGGGTAATGTGACTCTCATCACTACCAAGAGTGCTTGGGACCAAAAGCTGTCAGAAGCAAAGATTCAAGGCAAAGTAGTGATTGCCAACTTCAGTGCAACTTGGTGTGGTCCATGCAAATCAATTGCACCACACTACGTTGAGCTATCAGAGAAGCATCCGTCTCTTATGTTCTTGACCATTGACGTTGATGAATTAACGGAGTTTAGCACAGAAATGGATGTAAAAGCTACTCCAACATTCTTCTTCTTTAGAGATGGTAAACAGATTGATAAACTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCGCAATTGTTGATTCACAGGTCCCCACTGGTCAGAAGTAA 426 44.13 MGLCCFSSTPTDEEETDSHPEFAGGNVTLITTKSAWDQKLSEAKIQGKVVIANFSATWCGPCKSIAPHYVELSEKHPSLMFLTIDVDELTEFSTEMDVKATPTFFFFRDGKQIDKLVGANKPELQKKITAIVDSQVPTGQK 141
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02023 141 Pfam Thioredoxin 28 129 IPR013766 -
Fso1g02023 141 PRINTS Thioredoxin family signature 97 108 - -
Fso1g02023 141 PRINTS Thioredoxin family signature 58 67 - -
Fso1g02023 141 PRINTS Thioredoxin family signature 50 58 - -
Fso1g02023 141 Gene3D Glutaredoxin 1 139 - -
Fso1g02023 141 FunFam Thioredoxin 24 133 - -
Fso1g02023 141 SUPERFAMILY Thioredoxin-like 23 132 IPR036249 -
Fso1g02023 141 CDD TRX-family 40 128 - -
Fso1g02023 141 ProSiteProfiles Thioredoxin domain profile. 13 133 IPR013766 -
Fso1g02023 141 ProSitePatterns Thioredoxin family active site. 51 69 IPR017937 -
Fso1g02023 141 PANTHER THIOREDOXIN 25 130 IPR050620 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02023 K03671 thioredoxin
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2606395 Fso Fso1g02023 Fso-Chr1:59300202 Fso7g00085 Fso-Chr7:984193
2637651 Fso Fso1g02023 Fso-Chr1:59300202 Fso12g01885 Fso-Chr12:57258603