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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01770 ATGGCTTCTGAACCACTGAAACGAAACTGGTCAATTCACGATTTCGAGATCGGAAAACCCCTCGGAAAAGGGAAATTCGGTCGGGTCTATCTCGCCCGTGAAGCGAAGAGCAAGTATATAGTCGCATTGAAGGTGATATTCAAAGAGCAGATTGAAAAGTACAGGCTGCAGCACCAGCTGAAGAGAGAGATGGCGATCCAAACTAGTCTTCGACATCCGCATGTTCTCAGGCTGTACGGATGGTTTCACGATGCGGAGAGGATATTCTTGATTTTGGAGTATGCTCATGGCGGTGAGCTGTACGGGGAGCTTCGGAGATCGGGTCATCTATCGGAGAAACAAGCTGCCACTTACATTGCTAGCCTTACCCAAGCATTAGCATACTGTCATGAAAAGCATGTTATCCATCGCGATATCAAGCCTGAGAATTTGTTGCTTGATCACAAGGGTCGATTGAAGATAGCTGATTTCGGGTGGTCCGTGCAGTCAAAAAACAAGAGACACACAATGTGTGGAACATTAGACTATCTAGCACCAGAGATGGTGGAAAATAAAGCTCATGATTATGCAGTTGATAATTGGACTTTAGGTGTTTTATGTTATGAATTTCTCTATGGTGTCCCTCCTTTTGAGGCAGACAGCCAAGCAGATACATTTCGAAGGATCATGAAGGTTGACCTTACATTTCCTTCTACCCCTCATGTTTCTGATGAAGCTAAAGTTCTCATCACACAACTTTTGGTGAAAGACTCTGCAAAAAGACTCTCCCTTGAGAAGATATTAAAGCATCCTTGGATCATCATGAATGCTGATCCCAATGGTACTTTCTCTAAGTAG 837 43.97 MASEPLKRNWSIHDFEIGKPLGKGKFGRVYLAREAKSKYIVALKVIFKEQIEKYRLQHQLKREMAIQTSLRHPHVLRLYGWFHDAERIFLILEYAHGGELYGELRRSGHLSEKQAATYIASLTQALAYCHEKHVIHRDIKPENLLLDHKGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGVLCYEFLYGVPPFEADSQADTFRRIMKVDLTFPSTPHVSDEAKVLITQLLVKDSAKRLSLEKILKHPWIIMNADPNGTFSK 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01770 278 FunFam Aurora kinase A 7 98 - -
Fra18g01770 278 CDD STKc-Aurora 14 266 - -
Fra18g01770 278 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fra18g01770 278 Pfam Protein kinase domain 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fra18g01770 278 ProSitePatterns Serine-Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Fra18g01770 278 PIRSF ILK 4 269 - -
Fra18g01770 278 FunFam Serine-threonine-protein kinase ark1 7 278 - -
Fra18g01770 278 SMART serkin-6 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fra18g01770 278 Gene3D Transferase(Phosphotransferase) domain 1 98 275 - -
Fra18g01770 278 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 4 275 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Fra18g01770 278 SUPERFAMILY Protein kinase-like (PK-like) 9 268 IPR011009 -
Fra18g01770 278 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
Fra18g01770 278 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01770 K08850 aurora kinase, other [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2443974 Fra Fra18g01770 Fra-Chr18:66196913 Fra9g00550 Fra-Chr9:4589331
2456146 Fra Fra18g01770 Fra-Chr18:66196913 Fra18g01772 Fra-Chr18:66423146
2461965 Fra Fra18g01710 Fra-Chr18:65112199 Fra18g01770 Fra-Chr18:66196913
2482330 Fra Fra12g01889 Fra-Chr12:34232043 Fra18g01770 Fra-Chr18:66196913
2501493 Fra Fra18g01770 Fra-Chr18:66196913 Fra4g00005 Fra-Chr4:5059305
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fra1g01032 . 38 466 CBL-interacting serine-threonine protein kinases family AT5G25110 62.67 0.0 586.0
Fra2g00021 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 1.70e-66 213.0
Fra2g00502 . 61 445 CBL-interacting serine-threonine protein kinases family AT4G24400 78.811 0.0 643.0
Fra2g00531 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 60.28 0.0 511.0
Fra2g01445 . 42 301 CBL-interacting serine-threonine protein kinases family AT5G25110 43.956 9.60e-68 218.0
Fra2g01595 . 1 374 CBL-interacting serine-threonine protein kinases family AT4G14580 55.065 9.37e-137 397.0
Fra3g00326 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 41.695 2.61e-66 213.0
Fra3g01048 ACH 2 288 CBL-interacting serine-threonine protein kinases family AT2G25090 31.973 2.55e-44 159.0
Fra4g00005 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 66.667 0.0 597.0
Fra4g00605 . 3 425 CBL-interacting serine-threonine protein kinases family AT5G45820 67.857 0.0 619.0
Fra4g00651 . 30 287 CBL-interacting serine-threonine protein kinases family AT1G30270 28.521 6.56e-20 91.7
Fra5g01152 . 10 446 CBL-interacting serine-threonine protein kinases family AT1G01140 70.023 0.0 643.0
Fra6g00859 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.647 1.49e-66 213.0
Fra6g01562 . 12 438 CBL-interacting serine-threonine protein kinases family AT4G30960 71.329 0.0 610.0
Fra7g00623 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 57.206 0.0 536.0
Fra7g01148 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 86.047 0.0 784.0
Fra7g01646 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.362 9.76e-92 283.0
Fra7g02377 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 40.065 6.79e-68 218.0
Fra7g03281 . 38 469 CBL-interacting serine-threonine protein kinases family AT5G25110 69.124 0.0 642.0
Fra8g00316 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 42.105 6.04e-67 215.0
Fra8g00558 . 32 480 CBL-interacting serine-threonine protein kinases family AT5G25110 62.168 0.0 594.0
Fra8g01180 . 8 291 CBL-interacting serine-threonine protein kinases family AT4G24400 42.034 9.83e-65 209.0
Fra8g02145 . 14 439 CBL-interacting serine-threonine protein kinases family AT4G30960 74.533 0.0 620.0
Fra9g00550 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.842 1.70e-55 184.0
Fra9g01113 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 1.80e-92 285.0
Fra9g01197 . 2 321 CBL-interacting serine-threonine protein kinases family AT4G24400 37.798 1.64e-67 218.0
Fra10g00068 . 8 297 CBL-interacting serine-threonine protein kinases family AT4G24400 41.196 8.10e-68 218.0
Fra10g00752 . 1 445 CBL-interacting serine-threonine protein kinases family AT5G35410 71.3 0.0 662.0
Fra10g01075 . 19 277 CBL-interacting serine-threonine protein kinases family AT2G30360 38.202 1.22e-50 180.0
Fra10g01298 WGDA 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.0 4.97e-55 182.0
Fra10g01654 . 8 306 CBL-interacting serine-threonine protein kinases family AT4G24400 41.875 4.43e-71 226.0
Fra11g00461 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 84.186 0.0 771.0
Fra11g00519 . 16 489 CBL-interacting serine-threonine protein kinases family AT4G18700 70.886 0.0 678.0
Fra11g00520 . 2 410 CBL-interacting serine-threonine protein kinases family AT5G45820 60.0 0.0 538.0
Fra11g00874 ACH,WGDA 10 318 CBL-interacting serine-threonine protein kinases family AT5G58380 24.719 9.68e-13 68.2
Fra11g00937 . 19 279 CBL-interacting serine-threonine protein kinases family AT2G30360 37.918 4.26e-52 185.0
Fra11g01420 . 16 438 CBL-interacting serine-threonine protein kinases family AT4G30960 72.235 0.0 605.0
Fra11g02075 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 1.70e-66 213.0
Fra11g02747 . 42 310 CBL-interacting serine-threonine protein kinases family AT5G25110 43.972 1.23e-68 221.0
Fra12g01889 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 71.659 0.0 649.0
Fra13g00313 . 15 469 CBL-interacting serine-threonine protein kinases family AT4G18700 71.895 0.0 671.0
Fra13g00451 . 13 447 CBL-interacting serine-threonine protein kinases family AT1G01140 74.713 0.0 695.0
Fra13g01232 . 13 298 CBL-interacting serine-threonine protein kinases family AT2G26980 39.414 9.94e-68 216.0
Fra13g01276 . 15 472 CBL-interacting serine-threonine protein kinases family AT4G18700 79.303 0.0 747.0
Fra13g01302 . 10 436 CBL-interacting serine-threonine protein kinases family AT5G01820 62.069 4.23e-178 503.0
Fra13g01303 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G58380 53.363 5.56e-165 470.0
Fra16g00162 . 326 444 CBL-interacting serine-threonine protein kinases family AT3G17510 53.782 5.65e-37 128.0
Fra16g00574 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.756 8.64e-94 290.0
Fra16g00905 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 41.695 4.00e-66 213.0
Fra17g00208 . 6 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.529 6.26e-90 280.0
Fra17g00218 . 59 279 CBL-interacting serine-threonine protein kinases family AT2G25090 25.896 1.13e-08 56.6
Fra17g00574 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 69.18 0.0 639.0
Fra17g00575 . 16 422 CBL-interacting serine-threonine protein kinases family AT2G30360 60.048 1.47e-179 506.0
Fra17g01536 . 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 27.653 2.20e-13 68.9
Fra17g01607 . 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 27.653 2.20e-13 68.9
Fra18g00584 ACH 9 275 CBL-interacting serine-threonine protein kinases family AT2G26980 33.455 4.58e-46 161.0
Fra18g01165 . 15 422 CBL-interacting serine-threonine protein kinases family AT2G30360 61.779 0.0 526.0
Fra18g01169 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 61.758 0.0 578.0
Fra18g01710 . 4 277 CBL-interacting serine-threonine protein kinases family AT5G10930 39.35 5.36e-63 202.0
Fra18g01770 . 12 277 CBL-interacting serine-threonine protein kinases family AT5G10930 40.149 5.42e-63 202.0
Fra18g01772 . 18 428 CBL-interacting serine-threonine protein kinases family AT5G01820 60.138 1.24e-172 490.0
Fra18g01773 . 1 443 CBL-interacting serine-threonine protein kinases family AT5G58380 56.6 0.0 526.0
Fra10000257.1g00004 . 1 451 CBL-interacting serine-threonine protein kinases family AT5G58380 65.708 0.0 619.0
Fra10000061.1g00003 . 1 445 CBL-interacting serine-threonine protein kinases family AT4G24400 80.089 0.0 751.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fra Pkinase 8.4e-75 CL0016 PK Aur