AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu3g00006 ATGTCTTCTTCATTTCTATTTATCTTTCTCATTACTCTTCACTCTCAAACTCTGAACCAACCTGTCTGCCTGCAATTACTACCATTTCTCCTGCATCCCTTTTGTTCATTTGCGATGGGCAACTACAGGTTCAGATTCTCAAACATCATACCAAACTCATGGTTTTACACTTCTCATAACAACAAAATTACCAAAACACAACCCATCACAACTTCATCTTCTTCATCATCATCTGTATCATCACAACCCGCAATACACCACAGAAAATCCTATTATTTCACTAGAGAGTTAAGTGTACCCGACCCGACGACCACCCCTATTCACGATCGGTCACCTCCCGAACCGCGGAGAAAGTCATCCAAGAAAAAAAGACCTACTACCCCCAAGAAACCAATTCGGCGAAAATTGATTTCTCCTCCGGCAACTGCACGATGCAGCTACCAGGAGTCTGTTAAAACGGACTCCATAGAAATTTTCTCGGATAACGAAGTTTTGTTGCCTGAACAACCAAGACCTGTTGGTTGTTCGTGCACAACAAATTCGTTGAACGAGGAGGTTTATGCGAGAGTTGACCTCCCGCGGATAATAACCAAACCGGTCAAACAGGACGAATTCGGGTCGGGTAAATGGGTGCTTAATGGAGGAAGTCGGATGGGTAGTCCGGTTAGAAAAGCGAAAGGAAACGGTTACTCACCGCGGTTAGGGAACCGGGTTAAGGTAAATGGGATAAGGAGGAGGAACGGGAAGGGGCGGAGCTTGTCCGAAAGTTTGGCGGTTGTGAAAACATCGGCGGATCCCGGGAGGGATTTTAAGGAATCAATGGTTGAGATGATAATGGAGAATAATATTAAGAGTTCAAAAGATTTGGAAGATCTTCTTGCATGTTATCTTGCATTGAATTCTGATGAGTATCATGACTTGATCATCAAGGTATTCAAGCAGATTTGGTTCGAGTGTACTGATATTAGACTGTAG 975 43.59 MSSSFLFIFLITLHSQTLNQPVCLQLLPFLLHPFCSFAMGNYRFRFSNIIPNSWFYTSHNNKITKTQPITTSSSSSSSVSSQPAIHHRKSYYFTRELSVPDPTTTPIHDRSPPEPRRKSSKKKRPTTPKKPIRRKLISPPATARCSYQESVKTDSIEIFSDNEVLLPEQPRPVGCSCTTNSLNEEVYARVDLPRIITKPVKQDEFGSGKWVLNGGSRMGSPVRKAKGNGYSPRLGNRVKVNGIRRRNGKGRSLSESLAVVKTSADPGRDFKESMVEMIMENNIKSSKDLEDLLACYLALNSDEYHDLIIKVFKQIWFECTDIRL 324
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu3g00006 324 NCBIfam uncharacterized plant-specific domain TIGR01568 258 318 IPR006458 -
Hetu3g00006 324 Pfam Transcriptional repressor, ovate 263 318 IPR006458 -
Hetu3g00006 324 MobiDBLite consensus disorder prediction 117 131 - -
Hetu3g00006 324 Pfam DNA-binding domain 39 82 IPR025830 GO:0003677(InterPro)
Hetu3g00006 324 MobiDBLite consensus disorder prediction 98 145 - -
Hetu3g00006 324 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 71 319 IPR038933 GO:0045892(InterPro)
Hetu3g00006 324 ProSiteProfiles OVATE domain profile. 259 318 IPR006458 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu3g00006 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
268606 Hetu2g00083 Hetu3g00006
269341 Hetu3g00006 Hetu2g00083
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr2:77075492 Hetu3g00006 Hetu-Chr3:370710 dispersed
Hetu Hetu-Chr38:80824062 Hetu3g00006 Hetu-Chr3:370710 dispersed
Hetu Hetu-Chr39:57662338 Hetu3g00006 Hetu-Chr3:370710 dispersed
Hetu Hetu-Chr3:370710 Hetu47g04170 Hetu-Chr47:244377413 dispersed
Hetu Hetu-Chr1:529255 Hetu3g00006 Hetu-Chr3:370710 wgd
Hetu Hetu-Chr2:2652378 Hetu3g00006 Hetu-Chr3:370710 wgd
Hetu Hetu-Chr2:387040 Hetu3g00006 Hetu-Chr3:370710 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hetu Ovate 4e-24 No_clan TF OFP