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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann3g01635 ATGGAAAACGACTTCGATCGACTTCTCTTCTTCGAACACGCCCGCCGCACTGCCGAAGTCACTTACACCAAAAACCCACTCGACACCGAGAATTTAACTAGATGGGCAAGCGCGTTGCTCGAATTATCCACTTTTCAATCTGTTCAGGATTCCAAACTTATGATCAAAGTTGCGATATCGAAATTGGATGAAGCGTTAAAGATTGATCCGAGGAAACATGATACGTTGTGGTGTATGGGAAATGCGCAAACTTCTTATGCTTTTTTGACTCGTGACGAAGACGAAGCAAAGGATTATTTTGATTTGGCGTATGTTTACTTTCAGCAGGCTGTTGAAGAGGATCCAGGGAACGCGCATTACCGCAAGTCATTGGAAGTGGCTGTAAAGGCTCCTGAATTACACGCCGAGCTCCATAAACAGGGATCTATTCAACAAGCTATGGGACCGGTGGCAGGAGGTGGTCCTTCAACCTCTTCTAGTATCAAGGGTCCGAAGGCACAAAAGAACAGCGATCTGACATATGATATACTTGGTTGGGCTATTCTTGCTATTAGTATTGTGGCATGGGTTGGATTCGCCAAAGCAAATGTACCTCCACCACCTTCTCGATAA 612 45.26 MENDFDRLLFFEHARRTAEVTYTKNPLDTENLTRWASALLELSTFQSVQDSKLMIKVAISKLDEALKIDPRKHDTLWCMGNAQTSYAFLTRDEDEAKDYFDLAYVYFQQAVEEDPGNAHYRKSLEVAVKAPELHAELHKQGSIQQAMGPVAGGGPSTSSSIKGPKAQKNSDLTYDILGWAILAISIVAWVGFAKANVPPPPSR 203
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann3g01635 203 MobiDBLite consensus disorder prediction 151 167 - -
Aann3g01635 203 SUPERFAMILY TPR-like 11 127 IPR011990 GO:0005515(InterPro)
Aann3g01635 203 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515(InterPro)
Aann3g01635 203 MobiDBLite consensus disorder prediction 145 167 - -
Aann3g01635 203 Pfam Plant specific mitochondrial import receptor subunit TOM20 5 194 - -
Aann3g01635 203 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 2 202 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann3g01635 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
2055 Aann3g01635 Aann3g05520
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr3:102083344 Aann3g02697 Aann-Chr3:125266309 dispersed
Aann Aann-Chr1:186746031 Aann3g01635 Aann-Chr3:102083344 transposed
Aann Aann-Chr3:102083344 Aann3g05520 Aann-Chr3:162872780 wgd