AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00689 ATGGAGACATTATCATCTCCTTCACATCAGACCCTAATTTCAGCCAATTTCACTTCCAGATCTGCTTATTCTAATGGAATTTCACTACCGTCACCGTTGGTCAAGATTCACCGTCGTAGGTTTGCTGCTGGAGTCAAAGCTTCTGTTGCCGTTGACCAAGAGAAAAAAGTTGCCTTGCTTAGAATTGGTACTAGAGGAAGTCCGTTAGCACTTGCACAAGCTTATCAGACACGAGATAAACTCATGGAAACTAGTAGCGAGTTGGCAGAAGAGGGGGCTATCGAGATTATAATAATTAAAACAACGGGTGATAAAATATTGACTCAACCTCTTGCAGATATTGGTGGGAAAGGTTTGTTTACTAAAGAAATAGACGAGGCTCTTCTAAATAGTGATATCGACATTGCTGTCCATTCCATGAAAGATGTCCCAACTTATCTGCCTGACAAAACAATTTTACCTTGCAATCTTCCTCGTGAGGATGTTCGTGATGCATTCATTTGCTTGAGTGCAAGTTCTATAGCTGATCTTCCAGCTGGAAGCGTTGTTGGTACTGCTTCACTAAGAAGGAAGTCTCAACTACTTCACCGACATCCTCATCTCATTGTACAAGATAACTTTCGAGGCAATGTGCAGACAAGGTTAAAGAAACTTAAAGAAGGGAATGTCAATGCTACTTTATTAGCTTTAGCTGGACTGAAGCGCTTAAGTATGACTGAACATGTGACTGCGATTCTTTCTATTGATGACATGCTTCCGGCTGTTGCACAAGGTGCAATTGGAATCGCTTGTAGAAGCGACGATGACAGGATGGCTGATTACATAGCCAAGCTAAATCACGAAGAAACAAGATTGGCGGTTGCATGTGAGCGTGCTTTTCTATTGACACTTGATGGATCTTGTAGAACACCCATTGCCGGATACGCTTCCAGGGATGAAGATGGTAATTGCCTCTTTAGAGGGTTAGTGGCCTCACCGGATGGAACTAAAGTACTGGAAACATCAAGAAAAGGATTGTATACTTATGATGATATGATTTTGATGGGGAAGGATGCTGGTGAGGAACTACTTAAGCGTGGTGGTCCTGGTTTCTTTAACAGTTAG 1104 42.12 METLSSPSHQTLISANFTSRSAYSNGISLPSPLVKIHRRRFAAGVKASVAVDQEKKVALLRIGTRGSPLALAQAYQTRDKLMETSSELAEEGAIEIIIIKTTGDKILTQPLADIGGKGLFTKEIDEALLNSDIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFICLSASSIADLPAGSVVGTASLRRKSQLLHRHPHLIVQDNFRGNVQTRLKKLKEGNVNATLLALAGLKRLSMTEHVTAILSIDDMLPAVAQGAIGIACRSDDDRMADYIAKLNHEETRLAVACERAFLLTLDGSCRTPIAGYASRDEDGNCLFRGLVASPDGTKVLETSRKGLYTYDDMILMGKDAGEELLKRGGPGFFNS 367
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00689 367 Gene3D - 60 269 - -
Aann4g00689 367 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 279 366 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 PANTHER PORPHOBILINOGEN DEAMINASE 56 365 IPR000860 GO:0004418(InterPro)|GO:0004418(PANTHER)|GO:0005737(PANTHER)|GO:0006783(PANTHER)|GO:0033014(InterPro)
Aann4g00689 367 FunFam Porphobilinogen deaminase 60 163 - -
Aann4g00689 367 Gene3D - 161 261 - -
Aann4g00689 367 CDD PBP2-PBGD-1 59 338 - -
Aann4g00689 367 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 290 306 IPR022419 GO:0004418(InterPro)|GO:0018160(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 60 272 IPR022417 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 PIRSF PBGD 36 367 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 FunFam Porphobilinogen deaminase 280 367 - -
Aann4g00689 367 PRINTS Porphobilinogen deaminase signature 182 199 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 PRINTS Porphobilinogen deaminase signature 134 153 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 PRINTS Porphobilinogen deaminase signature 103 123 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 PRINTS Porphobilinogen deaminase signature 202 219 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 PRINTS Porphobilinogen deaminase signature 289 306 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 FunFam Porphobilinogen deaminase, chloroplastic 164 261 - -
Aann4g00689 367 SUPERFAMILY Periplasmic binding protein-like II 60 277 - -
Aann4g00689 367 Hamap Porphobilinogen deaminase [hemC]. 59 359 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 Pfam Porphobilinogen deaminase, C-terminal domain 285 358 IPR022418 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 NCBIfam hydroxymethylbilane synthase 60 359 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Aann4g00689 367 Gene3D - 280 366 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00689 K01749 hydroxymethylbilane synthase [EC:2.5.1.61]