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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00700 ATGGCCTTCATTTCTAAAGTTCACAACTTATCCAGCGACTTTCAAACTCCGACAACCACCCTACCAATGTGGTATGATGAAACTACTTCACCAAGTGTCTTTGACAACTATGGGATCACAATGCCACTCGAGTATGACATCACTTCGTGGAAGTCTTCATTAATCCCTGAGAGATTTGGGGTTTCAGAGATGGTGGTTCCAACTTCACCCGCTGGATTCAGTAGCATTCCTGTTGGAAATGATTATCAAAAGGTTGAAAACGACGAATATTTTTGTAGTAAGGGTGGCTACGGCGCAAACTCATGGTCATCTTATCAAACTACAACTAATAATTGGGAAACCGAGAACCAGAAAACAAGTAAAGAAATCGAAGAACCAACATTAAAGATTGGGAGGTATTCAGTGGAAGAAAGGAAAGACAAGATCATGAGGTATCTGAAGAAGAGAAACCAAAGGAACTTCAATAAGACCATTAAGTATGAATGCCGAAAGACATTAGCAGACAAGCGAATACGAGTTCGAGGGAGGTTTGCGAAGAACAATAATGATAATCATCATCATCATCATGACCATCACGATCATCAACCTTGTGAAGATCAAGTGCTGCCTAACTTCAATATTGCCGATAATCTTTTTGAGGAAGACATTCAACAGCTATACACCAACAATTTTCTGATGAAGCAGGATTATGATGAAGAAGAAGAATGGCTGCAAGAAGCGATGGCTAGTTTATTGTATTCACCACAGATTAACTAG 756 39.68 MAFISKVHNLSSDFQTPTTTLPMWYDETTSPSVFDNYGITMPLEYDITSWKSSLIPERFGVSEMVVPTSPAGFSSIPVGNDYQKVENDEYFCSKGGYGANSWSSYQTTTNNWETENQKTSKEIEEPTLKIGRYSVEERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNNNDNHHHHHDHHDHQPCEDQVLPNFNIADNLFEEDIQQLYTNNFLMKQDYDEEEEWLQEAMASLLYSPQIN 251
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00700 251 MobiDBLite consensus disorder prediction 179 198 - -
Aann4g00700 251 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 88 241 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Aann4g00700 251 MobiDBLite consensus disorder prediction 179 199 - -
Aann4g00700 251 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Aann4g00700 251 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00700 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:47187799 Aann6g03157 Aann-Chr6:86312076 dispersed
Aann Aann-Chr4:47187799 Aann6g00712 Aann-Chr6:39349107 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g02313 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.161 7.81e-92 273.0
Aann1g02501 . 1 103 C2C2-CO-like Transcription Factor family AT4G27310 52.427 1.39e-29 107.0
Aann1g03614 . 339 373 C2C2-CO-like Transcription Factor family AT5G48250 71.429 5.23e-13 58.5
Aann1g03615 . 191 230 C2C2-CO-like Transcription Factor family AT3G07650 55.0 5.88e-07 42.0
Aann1g03616 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.297 4.96e-137 393.0
Aann1g04690 ACH 1 318 C2C2-CO-like Transcription Factor family AT1G75540 44.478 2.17e-69 217.0
Aann1g05890 ACH 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.835 1.43e-122 356.0
Aann2g01697 . 9 328 C2C2-CO-like Transcription Factor family AT2G47890 45.652 2.51e-93 280.0
Aann2g03179 ACH 285 401 C2C2-CO-like Transcription Factor family AT1G68520 44.068 1.57e-20 90.9
Aann2g03969 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.244 1.17e-94 280.0
Aann3g01587 . 284 399 C2C2-CO-like Transcription Factor family AT1G68520 41.727 2.86e-20 90.1
Aann3g02269 ACH 3 106 C2C2-CO-like Transcription Factor family AT4G27310 50.476 2.40e-31 112.0
Aann3g03093 ACH 258 331 C2C2-CO-like Transcription Factor family AT5G57660 40.541 8.06e-10 57.4
Aann3g03762 ACH 254 332 C2C2-CO-like Transcription Factor family AT5G15850 43.902 3.05e-10 58.2
Aann3g05216 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 51.451 3.13e-118 345.0
Aann4g00700 . 252 330 C2C2-CO-like Transcription Factor family AT5G15850 34.177 1.58e-09 55.8
Aann4g01113 ACH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 50.164 2.00e-80 243.0
Aann4g01232 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 52.392 9.42e-130 376.0
Aann4g01429 ACH 1 196 C2C2-CO-like Transcription Factor family AT1G75540 55.0 2.57e-65 202.0
Aann4g03836 . 8 274 C2C2-CO-like Transcription Factor family AT2G24790 45.018 2.03e-66 206.0
Aann5g01561 . 272 319 C2C2-CO-like Transcription Factor family AT3G02380 62.5 1.01e-15 71.6
Aann5g01608 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.926 4.33e-76 234.0
Aann5g01609 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.926 4.33e-76 234.0
Aann5g03628 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 60.094 2.16e-84 246.0
Aann5g03696 ACH 4 170 C2C2-CO-like Transcription Factor family AT5G54470 43.023 1.15e-29 108.0
Aann6g00712 ACH 126 276 C2C2-CO-like Transcription Factor family AT2G24790 25.389 2.65e-11 61.6
Aann6g02530 ACH 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 1.85e-11 63.5
Aann6g03157 ACH 235 338 C2C2-CO-like Transcription Factor family AT5G15850 37.143 5.20e-13 67.4
Aann7g00282 ACH 270 386 C2C2-CO-like Transcription Factor family AT5G24930 35.246 5.16e-12 65.1
Aann8g01946 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 7.06e-11 58.9
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aann CCT 5.2e-18 CL0281 TR Others