AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00755 ATGAACAAACTTGGAAGAGGGCATCGCGACAAGATCCAACAGTTTGTAACCATCACTGGAGCAAGTGAAAAAGTTGCTACTCAGACCTTGAAGGCCAGTGATTGGCACCTGGATGGTGCATTTGACATCTTCTACAGCCAGCCTCAACCAAAATCATCATTCGCAGAGACACGACATATCGAGGAGTTATACAACAGATACAAAGATCCTTATGCTGATATGATTATGGCTGATGGTATCAGCAATCTATGCAATGACCTTCAGGTTGATCCTCAAGATATCGTTATGCTGGTTGTCTCGTGGCACATGAAGGCTGCTACAATGTGTGAATTCTCAAAGCAGGAATTTGTTGGTGGCTTGCAGTCTCTTGGGATAGATTCACTGGAAAAATTCCGTGATCGGATCCCATCTATACGTTCTGAACTGAAAGATGATCAAAAATTCAAGGAGATCTATAATTTTGCATTCGGCTGGGCAAAGGAGAAGGGTCAGAAGTCTCTGGCATTGGACACAGCAATTGGAATGTGGCAGTTGCTGTTTGAAGAAAAACAGTGGCCATTGGTTGAACATTGGTGCCAGTTCTTACAGGCACGGCATAACAAAGCTATTTCTAGAGACACGTGGTCACAACTGCTGGAATTTGCACGAAGCGTGGATCCTACACTATCAAATTACGATGCTGAAGGTGCGTGGCCATATCTACTTGATGAATTTGTTGAGTACCTAAAGGAGAACGGCATTATTCAGCAAAAGGGTCGTGTGCTCGATTTGCTAGGCCATATCTAA 786 43.77 MNKLGRGHRDKIQQFVTITGASEKVATQTLKASDWHLDGAFDIFYSQPQPKSSFAETRHIEELYNRYKDPYADMIMADGISNLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFVGGLQSLGIDSLEKFRDRIPSIRSELKDDQKFKEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFEEKQWPLVEHWCQFLQARHNKAISRDTWSQLLEFARSVDPTLSNYDAEGAWPYLLDEFVEYLKENGIIQQKGRVLDLLGHI 261
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00755 261 CDD UBA-DCNL 8 48 - -
Aann4g00755 261 Gene3D - 54 143 - -
Aann4g00755 261 Gene3D Cullin, PONY binding domain 144 252 IPR042460 -
Aann4g00755 261 ProSiteProfiles DCUN1 domain profile. 55 243 IPR005176 -
Aann4g00755 261 SUPERFAMILY UBA-like 7 46 IPR009060 GO:0005515(InterPro)
Aann4g00755 261 FunFam Defective in cullin neddylation protein 6 47 - -
Aann4g00755 261 Gene3D - 6 47 - -
Aann4g00755 261 FunFam Defective in cullin neddylation protein 144 249 - -
Aann4g00755 261 Pfam Cullin binding 131 241 IPR005176 -
Aann4g00755 261 FunFam Defective in cullin neddylation protein 54 143 - -
Aann4g00755 261 Pfam UBA-like domain 9 48 - -
Aann4g00755 261 PANTHER RP42 RELATED 24 245 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00755 K17822 DCN1-like protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:141576460 Aann4g00755 Aann-Chr4:49691968 dispersed
Aann Aann-Chr4:49691968 Aann3g01334 Aann-Chr3:94137079 transposed