AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00763 ATGATGAATAGTAATCCAGCTACTCCGATGAACGCAAACGCCCCCTCTTCAAGTGGATCTCCCGATCCAAACACTCCCAGACGCAACTCTAAGCGACCTAAATATTCTAGGTTTACACAGCAGGAGCTTCCAGCTTGCAAACCGATTCTTACCCCCAAATGGGTGATATCAGCATTCATGCTTGTGACGATTGTCTTCATCCCAATAGGACTTGCTTCCCTCTTCGCATCTCGTGATGTTGTTGAGATTGTTGACCGGTACGACAACGCCTGCCTAACAGGCTCAAAAAGTCAAAAGGTTCAAGCTATACAATCTGCTACTACTAATAAAACCTGTGTCAGGACCATAACAGTTTCAAAGCGAATGAAGCAGCCTATCTACATCTATTATCAGCTCGATAACTTCTATCAGAATCATCGCAGGTATGTCAAGAGCCGAAGTGATACTCAGTTGAGAAACCGAGGTGACGAGAACGACACAAGTACATGCAAGCCTGAAAATGAGGACGCAAATGGAAGGCCGATTGTGCCCTGTGGTCTTGTAGCATGGAGTTTGTTTAATGACACTTATAGCTTCTCCACAAGCAACCGAGAATTGCGTGTAAACAAGAGGCATATTTCATGGAAGAGTGACAGGGATGACAAGTTTGGCAGTGACGTCTTTCCGAAAAATTTCCAGAAAAATGAAACTCTTGTTGGTGGTGGAACTCTCAATGAGTCTATACCGTTAAGTGAGCAAGAAGACCTAATCGTGTGGATGCGAACTGCGGCTCTTCCAACTTTTAGGAAGTTGTATGGGAAGATAGAAGAAGATATTGAGGCGGGCGAGACAATAAACGTGGTATTAGAGAACAGATACAACACATATAGTTTCAGTGGCAAAAAGAAACTCGTGCTTTCGACAACCAGCTGGCTTGGTGGAAAGAATAACTTTATTGGCATTGCATATCTTGCTGTTGGTGGCTTGTGCTTCTTACTAGCAACAACTTTCACCATCATATATTTGTTTAAGCCAAGGCATCTTGGAGATCCTAGTTATTTGTCATGGAACCGGAACCCAGGTGGTCACTGA 1071 43.79 MMNSNPATPMNANAPSSSGSPDPNTPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIVDRYDNACLTGSKSQKVQAIQSATTNKTCVRTITVSKRMKQPIYIYYQLDNFYQNHRRYVKSRSDTQLRNRGDENDTSTCKPENEDANGRPIVPCGLVAWSLFNDTYSFSTSNRELRVNKRHISWKSDRDDKFGSDVFPKNFQKNETLVGGGTLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEEDIEAGETINVVLENRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATTFTIIYLFKPRHLGDPSYLSWNRNPGGH 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00763 356 PIRSF Lem3-Cdc50 2 352 IPR005045 GO:0016020(InterPro)
Aann4g00763 356 MobiDBLite consensus disorder prediction 146 166 - -
Aann4g00763 356 PANTHER CELL CYCLE CONTROL PROTEIN 50 27 348 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Aann4g00763 356 MobiDBLite consensus disorder prediction 1 26 - -
Aann4g00763 356 MobiDBLite consensus disorder prediction 1 37 - -
Aann4g00763 356 MobiDBLite consensus disorder prediction 146 169 - -
Aann4g00763 356 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 74 339 IPR005045 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00763 K26935 cell cycle control protein 50
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:5850738 Aann4g00763 Aann-Chr4:49839673 transposed
Aann Aann-Chr1:78548395 Aann4g00763 Aann-Chr4:49839673 transposed
Aann Aann-Chr1:78550515 Aann4g00763 Aann-Chr4:49839673 transposed
Aann Aann-Chr3:52413495 Aann4g00763 Aann-Chr4:49839673 transposed
Aann Aann-Chr5:105877472 Aann4g00763 Aann-Chr4:49839673 transposed
Aann Aann-Chr5:127369192 Aann4g00763 Aann-Chr4:49839673 transposed
Aann Aann-Chr1:78547258 Aann4g00763 Aann-Chr4:49839673 wgd