AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00785 ATGAACATCGAAATACACGGTCGACACGCACTCCTCTTCGACGACGACGCCACGTCATCATTCGTCAACTCCGAAGACGCACTCGTCGAATGGAACTCGTTGCTAATCGACCGTTACGACGTCCGGCATCTCCTCTCCGGCCCTCCGCCGTCACGACGACGGCGTAATCCACAAAAAACGTCATCTCATTCGTCTTCTGCTGATGCTGAGATTGATTATGAGCGGTATCTGGATTTACCGTCTGAGAATGAAGAGCACGAAGAAGATGCAAATCCGGAACCTGTGGGTGGATTCAATGCTGTTCCTTTTTCTTATGGAAATTACGAGGATTCTAGTGAACAAAAGATTGCTGGGGCTGAATCGGAAATACCTCAATTTCATCCCCCTTTCCCTGTTCCTGACAGTCTGGTTCAAAACTTGCCTTCTACAGAGAAAGTACATCAGATTATTGCAAGGACCGCTCTTTTTGTCAGTAAAAATGGAGGTCAATCTGAGATTGTTTTGAGGGTGAAGCAAGGAGACAATCCAACCTTTGGGTTCTTAATGCCTGACCATCACCTACATCCATACTTCAGGTTTCTGGTGGATCACCAAGATCTTCTTCAGTCAAAAGAGGACAAACAGACTGAAAATGAGGAAACATCCAATACTGGAGCATTGTCTTTACTTGGTTCTGTTTATGGCACTGGTGAGGATGATGATGTTGGAGCAGAGCATGCATCATCATCAACTAAAGAGGTCATGGATGTAGATGCTAAAATGTTGCCAGCTGGTAAAGACGAGCCTGTTTCAAAGCAGTCGATTTCTTCCAAGGAAGATGTTCTTATAATAAAAAGGAATTCTTTATCAAATGCTTTGAAGCCTGTGCGTACTAGCAGTCTGAGGAAAGATGATTTCTCAGGTTCAGTCTCTGCTGTTCCTGATAAGTTACGTGCTTCTTCTCTTCCCCCAATTCCCAAGAATGAGCATATTCTTGTGGATCCTTCATCCGAAATGAAACTGCTGGTTGACAAGATAGTTGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGACAGTACTTATGGAACAAGACCGTGGTCATGGAAGATTCCCATTCTTAATCCCATCTAATATATTTCATCCGTACTATTTAAAGGTTCTCCAGAAAGCCCAGGAGACGAAGTTAACGGTGAAGAGTTTCCACAATGAGAAGGAAGATTCCAGGGGACATATCTCAAGCAAGAAACGTAAGGTTGATGAGAAATCTTTGGTGGAACCTGATGATATACCACTTGATTCTGAAAGGAAAGAGAAGTTTAAGATGGTAATCAACAAATCTAAAAGGGAAGGATCAGATGTGCCAGCTAAAGCGACAGAACAGTCACCTGGAATCCAGGTGGATGCCACTCAAGCAGCAGCTATTCTTCAGGCTGCTACAAGAGGCATTAAGCCTCCAAATTTAGGAAATTTTTTTGGACAACCCTCTAATGAAGCCGATTCCTCTGACACACATTTGACTCATGAGCAGAAATTGAAGGCTGAGAGGCTTAAAAGAGCTAAGATGTTTGTGGCTCAGCTGAAAAGTGGAGCTGCTCCATCAAAAACCGAACCCTCGCGTGGCGTATCAGCTGAGCCACAAGGATCAGTGGCTGAAAATAGTCACAGCACAACCCCTATAGATTTTCATACTAAAGACAAGATAGTAAAAACAGAGAAGATAGTAAAAACAGAAGAACATTTGAATGATGAAAAACGAGCAAAGAGGAAATACCGTGCTAGGAAAGATGAAGAAGGTGACACATCAGAAGATGATGACGACGTGGTTGATGAGAGAGAAGGAAAAAGGTCGCATAGACACCGTACAGAAAAACATCGATCGCGTGATCATGTAAAAAAACACCGATCACATCGTTCTTCCCGTAAACATGATGAAGAAAGGGATCGTGATTACTCGACGAAAAATAAACATCAATCATCTAGCTCTTACGAAGATGATGAACACGAAAGTGAACATGAATATGCCAGAAAGAAGCACCGGTCACATCGTTCTTCACATGATGAACACGAAAGTGAACATGAATATGCCAGAAAGAAGCACCGGTCACATCGTTCCTCACATGATGAAGATGAAGTTGACAGTGACGATAAATATTCAAGGAAAAAGAGAACACATAGATCTCACAAGTCTTCTCATCACAGTAGAGATAAACGTAAGCATAGGAAAAGTCACTCTTATAGGCATAGGCAGAAGCCTGATGTCTCTTCAGAAGAAGAGCTAAGGGATCATAATAAGGCTGAAAAACATAAACAGGGTTCAAATTCGGAGAAAGAAGAACTGGAAGAGGGAGAGATCAGTTCGAAATTGTCGGGTCAGTCCAGAGGAGATCCATTTGTTAATGGTGCTAGCAGAGAACCGTCGGTCGATGTATCGAGTCAAGATAGGAGACCAGTCACTCAACCTGTAGAGACAGCTGAGGTTCCTGATGATCTTATGGCCAAAGTGAGAGCAATGTTGATGTCCACAATGTAA 2511 42.93 MNIEIHGRHALLFDDDATSSFVNSEDALVEWNSLLIDRYDVRHLLSGPPPSRRRRNPQKTSSHSSSADAEIDYERYLDLPSENEEHEEDANPEPVGGFNAVPFSYGNYEDSSEQKIAGAESEIPQFHPPFPVPDSLVQNLPSTEKVHQIIARTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQDLLQSKEDKQTENEETSNTGALSLLGSVYGTGEDDDVGAEHASSSTKEVMDVDAKMLPAGKDEPVSKQSISSKEDVLIIKRNSLSNALKPVRTSSLRKDDFSGSVSAVPDKLRASSLPPIPKNEHILVDPSSEMKLLVDKIVEFIIKNGRQFETVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQETKLTVKSFHNEKEDSRGHISSKKRKVDEKSLVEPDDIPLDSERKEKFKMVINKSKREGSDVPAKATEQSPGIQVDATQAAAILQAATRGIKPPNLGNFFGQPSNEADSSDTHLTHEQKLKAERLKRAKMFVAQLKSGAAPSKTEPSRGVSAEPQGSVAENSHSTTPIDFHTKDKIVKTEKIVKTEEHLNDEKRAKRKYRARKDEEGDTSEDDDDVVDEREGKRSHRHRTEKHRSRDHVKKHRSHRSSRKHDEERDRDYSTKNKHQSSSSYEDDEHESEHEYARKKHRSHRSSHDEHESEHEYARKKHRSHRSSHDEDEVDSDDKYSRKKRTHRSHKSSHHSRDKRKHRKSHSYRHRQKPDVSSEEELRDHNKAEKHKQGSNSEKEELEEGEISSKLSGQSRGDPFVNGASREPSVDVSSQDRRPVTQPVETAEVPDDLMAKVRAMLMSTM 836
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00785 836 Coils Coil 567 587 - -
Aann4g00785 836 MobiDBLite consensus disorder prediction 45 72 - -
Aann4g00785 836 SMART surpneu2 333 386 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 SMART surpneu2 147 200 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 Gene3D Surp module 142 197 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 Pfam Surp module 148 196 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 Pfam Surp module 335 382 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 SUPERFAMILY Surp module (SWAP domain) 312 382 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 Gene3D Surp module 319 389 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 MobiDBLite consensus disorder prediction 519 822 - -
Aann4g00785 836 MobiDBLite consensus disorder prediction 634 669 - -
Aann4g00785 836 Pfam Alternative splicing regulator 3 88 IPR019147 -
Aann4g00785 836 ProSiteProfiles SURP motif repeat profile. 335 377 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 MobiDBLite consensus disorder prediction 394 424 - -
Aann4g00785 836 MobiDBLite consensus disorder prediction 742 778 - -
Aann4g00785 836 MobiDBLite consensus disorder prediction 798 812 - -
Aann4g00785 836 ProSiteProfiles SURP motif repeat profile. 149 191 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 MobiDBLite consensus disorder prediction 677 713 - -
Aann4g00785 836 SMART DRY-EERY-2 1 109 IPR019147 -
Aann4g00785 836 MobiDBLite consensus disorder prediction 714 741 - -
Aann4g00785 836 MobiDBLite consensus disorder prediction 552 592 - -
Aann4g00785 836 SUPERFAMILY Surp module (SWAP domain) 125 196 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Aann4g00785 836 MobiDBLite consensus disorder prediction 611 633 - -
Aann4g00785 836 MobiDBLite consensus disorder prediction 479 500 - -
Aann4g00785 836 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 818 IPR040397 GO:0000395(PANTHER)
Aann4g00785 836 MobiDBLite consensus disorder prediction 533 551 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00785 - -