AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00897 ATGGAGTCGATAATAGCTCGAGCGTTGGAGTACACATTGAAATACTGGCTTAAATCATTTACCAGAGATCAGTTTAAGCTACAAGGACGAACTGTTCAGCTCTATAATCTAGATATAAATGGTGATGCCTTGCACGCGAGCCTCGGGTTGCCTCCGGCATTGAATGTTAAAACCGCAAAAGTCGGCAAGCTAGAGATAATACTCCCTTATTTGAGCAACGTGCAAGTGGAGCCAATTGTTGTGCAAATCGATAAGCTTGACCTGGTATTGGAGGAAAATGACGATTTGGATGCTTACAAAAGTACAGACAGTCCACAAACGCCATCCAGTCCAGCAAAAGGCAGTGGATATGGATTTGCGGACAAGATTGCAGATGGCATGACATTGGAAGTACGGACTGTCAATCTTTTAGTTGAGACTCATGGGGGTGCTAGACGTCGTGGAGGAGCAACTTGGGCATCACCGATGGCATCTATTACTATCCGCAACCTCTTGCTTTATACCACAAATGAGAACTGGCAGGTTGTAAATCTTAAGGAAGCGAGGGACTTTTCAAATGACAAGAAGTTCATCTATGTTTTCAAAAAGCTTGAATGGGAACATCTATCCATCGACCTCCTGCCTCACCCTGATATGTTTGCAGCATTTTCTGAGGGTGCATTTAAGGATGACGATGGTGCAAAGCGGGTGTTCTTTGGTGGGGAGCGCTTTCTTGAAGGGATATGTGGGGAAGCTTATATTACTATTCAAAGGACAGAGCTTAATAGTCCACTAGGGTTGGAACTCCAGTTACATATTACTGAAGCCGTGTGCCCAGCTTTGAGTGAACCAGGATTACGGGCTCTTCTTCGTTTCTTTACTGGATTTTATGTCTGTCTGAATAGAGGCGATGTCAATCCAAATGCGCAAGAGCGATCAGCAGAAGCTGCAGGGCGCACACTAGTCTCCATTATGGTGGACCATATATTCTTTTGCATCAAGGATACTGATTTCCAGTTAGAACTTATGATGCAGTCACTTCTCTTTTCTCGGGCAAGTCTTTCTGATGGAGAAATCGCCAAATGCTTGACACGGGTGATGATAGGTGGAGTATTTCTGCGGGATACTTCCTCTCGCCCACCATGCGCATTAGTGCAACCATCAATGCAGGATGCCCCAGAGGAACCGCTGAAGATTCCAGATTTTGGAAAAGATTTCTGTCCTCCAATATATCCATTAGGGGATCAGCAATGGAAATTGAGTGACCGCATTCCACTCATATCCCTTCATTGTCTTCAGTTTATCCCCTCACCTACCCCGCCATCGTTTTCTACTCAAACTGTTATTGACTGCCAGCCTCTTATGATACATCTTCAAGAAGATTCCTGTCTAAGAATATCATCTTTACTAGCTGACGGAATTGTGGTTAATCATGGTGATATTTTACCAGATTATACTGTCAATTCCCTTGAACTGAAAGTCAAAGGATTAGATATCACTGTTCCAATGGAAAATCAGAACGAGAGCTCCTTCACTGGAGCAAAACTTCATATTGAGAACCTATTCTTTCATGACTCCCCTTCCCTGAGGCTCAAGCTGCTCAATCTTGACAAAGATCCTGCATGCTTCTGTCTATGGAAAGGACAACCCATTGACGCCAGCCAAAAAAAATGGACAAGTGGAGCATCTCTTATTAATATGTCTCTAGAAACATGTAATAATTCAAAAGGAGTTAATGGGTCCCGTTCACACTCTTCGGAATTATGGAAATCTGTCGAGATAAAAGGTGTTTGTGTTCAAGTAGCAATGGTAACAGCAGACGGAAGCCCGTTAATAGAAATTCCACCTCCAGGAGGAGTTGTTAGGGTAGGAGTCGCTTGTGAACAATATCTGTCCAACACTTCCGTGGAGCAACTATTTTTTGTTTTGGATCTTTATACGTATTTTGGTACGGTCAGCGAGAAAATGGCATTGGTTGGAAAAAATAAACAAAAGAATGTGGTGAAGCGTGAGCTCTCAAATGGAAACCTGATAGAAAAGGTTCCTGGTGATACTGCTGTTAGTTTAGTAGTTAAGGACCTAAAGCTAACATTTCTAGAATCTTCCTCCATGGATATTCAGGGAATGCCTTTAGTTCAGTTTGTTGGGGAAGATATGTTCATGGAAGTTACTCATAGAACCTTGGGTGGTGCCATGGCCATTTCGTCAACTTTAAAGTGGGACAGAGTTCAGGTGGAGTGTGCAGAAACTGAGATAAGCTCGGTACATACGAATGGTGTAGTTGTAAATGCTACCGAAGATTTTGTTCCTGTTCAAAATGGCTACCCAAAACTGAGAGCTGTCTTTTGGGTGCAAAATGGAAGTAACTTACCATTTGTGAATTTACGTATGGTGCATGTTATTCCGTATAATGCACTGGATACAGAGTGTCATAGTTTAAGTGTTTCGGCTTGTATTGCGGGTGTGCGCCTTGCGGGAGGAATGAGTTACGCTGAAGCTCTTCTTCACCGATTTGGAATTTTAGGACCAGATGGTGGGCCAGGGGTTGGGCTCTCCAAGGGTTTGGACCATTTATCTGCGGGCCCATTGTCGAAACTTTTCAAACGATCACCTCTGCTTGTTGAGAACGCCAGGGAGAGTAAAAGTGAACGCGTAGAGGAGGAGAATCATATTGGTAACTTGCACTTGGGTGCACCAGATGATGTAGATATATCACTAGAATTGAAGGACTGGTTATTTGCACTGGAGGGTGCAGATATGGCAGAAAAATGGTGGTTATATAGTTCAGAGGATTCTTACAGAGAAGAGAGGTGCTGGCACACAACTTTTGACAGTATAAAAGCTAAAGCAAACAGCAGCAAAAAGTCCTCAGTGAATGGTAAAAAGAATATTCCTGGCTCAAAGAAGTATCCTGTCGAATCAATGACGGTTGGTATTGAAGGCTTGAAGACGTTAAAACCCCAGCAGCAGAAGGGAACTGCACCCCAGAATGGGCACAAGCAATTTGTTGACTCACATGGTGGTGTAGATTTTGAAGCTGATATAGTCTTGAATGAAGATGATGATGTTGATGGGACGATCAAATGGGTCTTAGAAAGTTTAAAATTTTCTGTGAAACATCCGGTTGAGGCAGTTGTAACCAAGGATGAACTGCAACATGTTGCTCAACTATGCAAGTCAGAAGTTGATTCCATGGGGCGAATAACTGCAGGAGTTTTACGTGTGTTGAAGTTAGAAGGATCAGTTGGTCAGTCAGCAATGAATCAACTAAGCAACCTTGGAAGTGAAGGGTTTGACAAGATCTTCTCGCCAGAGAACCCGCGCAGAGATAGTACTGCTTCTAGTGTCGGCATGAGTCCGTTTTCCCTAGTGGCTTCAGATAACCAACATTCTTCGTCTTTCAATTCAACATTAAATTCACTCGAGGCTGCATTATTGGAATCACAGACAGATTGTGCAGCTCTTGTCACTGAACTAAGCAGTTCGGAATCTCCCAAGCCACACATTCATAGTGTAGAACAACTTGCCCAGAAACTTGAGAGTATGCAGAAATTGTTATTTAAGTTGCAGAATGAGGTATAA 3561 43.08 MESIIARALEYTLKYWLKSFTRDQFKLQGRTVQLYNLDINGDALHASLGLPPALNVKTAKVGKLEIILPYLSNVQVEPIVVQIDKLDLVLEENDDLDAYKSTDSPQTPSSPAKGSGYGFADKIADGMTLEVRTVNLLVETHGGARRRGGATWASPMASITIRNLLLYTTNENWQVVNLKEARDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGICGEAYITIQRTELNSPLGLELQLHITEAVCPALSEPGLRALLRFFTGFYVCLNRGDVNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLELMMQSLLFSRASLSDGEIAKCLTRVMIGGVFLRDTSSRPPCALVQPSMQDAPEEPLKIPDFGKDFCPPIYPLGDQQWKLSDRIPLISLHCLQFIPSPTPPSFSTQTVIDCQPLMIHLQEDSCLRISSLLADGIVVNHGDILPDYTVNSLELKVKGLDITVPMENQNESSFTGAKLHIENLFFHDSPSLRLKLLNLDKDPACFCLWKGQPIDASQKKWTSGASLINMSLETCNNSKGVNGSRSHSSELWKSVEIKGVCVQVAMVTADGSPLIEIPPPGGVVRVGVACEQYLSNTSVEQLFFVLDLYTYFGTVSEKMALVGKNKQKNVVKRELSNGNLIEKVPGDTAVSLVVKDLKLTFLESSSMDIQGMPLVQFVGEDMFMEVTHRTLGGAMAISSTLKWDRVQVECAETEISSVHTNGVVVNATEDFVPVQNGYPKLRAVFWVQNGSNLPFVNLRMVHVIPYNALDTECHSLSVSACIAGVRLAGGMSYAEALLHRFGILGPDGGPGVGLSKGLDHLSAGPLSKLFKRSPLLVENARESKSERVEEENHIGNLHLGAPDDVDISLELKDWLFALEGADMAEKWWLYSSEDSYREERCWHTTFDSIKAKANSSKKSSVNGKKNIPGSKKYPVESMTVGIEGLKTLKPQQQKGTAPQNGHKQFVDSHGGVDFEADIVLNEDDDVDGTIKWVLESLKFSVKHPVEAVVTKDELQHVAQLCKSEVDSMGRITAGVLRVLKLEGSVGQSAMNQLSNLGSEGFDKIFSPENPRRDSTASSVGMSPFSLVASDNQHSSSFNSTLNSLEAALLESQTDCAALVTELSSSESPKPHIHSVEQLAQKLESMQKLLFKLQNEV 1186
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00897 1186 PANTHER UNCHARACTERIZED 1 1182 IPR026728 -
Aann4g00897 1186 Coils Coil 1165 1185 - -
Aann4g00897 1186 Pfam VPS13-like, N-terminal 1 102 IPR026854 -
Aann4g00897 1186 MobiDBLite consensus disorder prediction 98 117 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00897 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
2457 Aann4g00897 Aann5g00848
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
13852 Aann Aann4g00892 Aann-Chr4:52983795 Aann4g00897 Aann-Chr4:53115316
13854 Aann Aann4g00897 Aann-Chr4:53115316 Aann5g00848 Aann-Chr5:21850122
27959 Aann Aann4g00894 Aann-Chr4:53058629 Aann4g00897 Aann-Chr4:53115316