AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aann4g00898 | ATGGGTGCTATTACTTCTGCGGTTATTATGGATGCTATTACTTCTGTGGTTATTGATGGTACTAAAACACTCATTAAGTTCACGTGTTCAAGAATTAAGACCATTTCCGAGTATGAAGATAACATTCGTGATCTCCGGGAAGAGATTGTGAATCTCACTAGCAAAAAGATGGAAATTGAAGAAGATGTCACGTTAGCCAAACTAGAAGGGAAAGAACCAAAACTGCAAGTGAAAGAATATCTGAAGAATGTTTCTCAAGTGGAAAAGGATGTAATGCCGCTGCTAGCAATGGCGGATGAATATGCTGATGGTTGGGGCTCCAGTATTATGCATCAGTATCAGCACTGCTGCAGAGTGGCAAAACAACTTGATTTAGTAAAAGGGCTCAATTCTATTCATTTTGAAACTGTCGCACCTGAAACATGGTCTCCAATAAAAGCAGTGGAGGAAATGGCAGTGCCGTCACTTGTGGGACAGAGGGCAAAGTCAGATTTGAAGAAGCTTCTGGAAATCTTGAATAGGAACGATATCATAAAGATAGCTGTTTGGGGGAAGGGTGGCATAGGGAAAACGACATTGGTCAAGAACTTGAACAATGAGCTGTACTTTTCACATCCACATACTTTTGCAATCATCATTTGGGTTCAAGCGTCCAGGAGATTGAATTTGAGCAATATTCAGTCTCAGATCGCCAAAAGAATTCATTTAAAGCCAGAACCACGAGACACCCCTCACAGTTTATCTAACAGAATTCTTCGAAGACTGAAGAAAATGAAGATCCTCCTCATACTTGATGATGTGTGGGAAAAGGTTGATCTGGATGCTGTAGGTATTCCATCAAGGGATCCCTGTTGTAAGATCCTTTTAACAACTCGATCTTTTGATGTCTGCAGACACATGGCTGTTGATGAATCTTTTGAGCTAAATACTATGTGCGAAGTAGACGCTTGGGATCTTTTCGTTCACAGTGCTGGACCTGTACTTAATTTAGATGGCATAGAATCTCCAGCAAGGAAAATTGTCGCAGGTTTGCGCGGGTTGCCATTGGCAATCAAGACTCTTGGCAAGTCAATGAGGGACAGACCACAGATGGAAGTATGGCGAAATGCATGTCTTACATGGCATTGTTCATCACCTTTGTTCAAGAACATTGAGAATGAGGTTTTTGGGACTATGGCAACAAGTTATCATTTCTTACCAAGTAAAATTCTAAAGCAATGCTTTCTCTTTTGTTCGATGTACCCAGCAAGTTTCTCAATAGATGTCCATGAACTAATCCTATGTTGGTTATCTGATGGGTTGATCAATGAGAACCAAAGCATAAAGGATGCATTAAATTATGGGATTGCATTGGTTGAACACCTAAAGGACTCGTGTCTACTTGATCAAGATTCAGAAGGAACCGTGAAGATGCATGACATGTTTCGTGAATTAGCCTTGCTTCTGTCTAAGAGTGAAGAACTGTATGGTTTTCACTGCCAACCTGGCCATCCATTCTATCAGATGCCGCAGGAGTCTTCTAGACGTGTTTCTTTCACACGGTGCAGGATCAAAGACTTGCCAGAATTATCTAAATATTCTCAGCTGACTGTCCTGTTTCTCCAGGGTAATCCTATACAGAATATCCCAGACGATTTCTTTCAGAATCTTAATTCACTAAGGGTACTGAATTTGAGTGAAACTCATATCACGTCTTTACCTTCATCTTTCCTTTGCTTGCATGAATTGCGTTCTCTCTTTCTAAGAAGCTGTCCTTTAAAGAAGCTACCTTCTTTTGAAACTCTTTCTAAACTCTTAGTTCTTGATGTTTCTAGCACCAAAATCACAGAACTTTCTAAAGGGTTCAGAAGTTTACGTAGTTTGAGAGAACTTAACTTATCAAACACAGAGTATTTAAAGAAAATCGTAGCTGGAAGCATATCAGGTTTGTCAAGTCTCGAGACTCTAGATGTGTCTTTCAGTGCTTATAATTGGAACCCTAAGATCGGTACATATAAAAGATCAACATTTGATGAGTTATTATCACTGGACCACCTCTCAGTCCTTAAGATAAGGTTGGACTTTGTTGAGGATCTTGCATCTGCATCTTCCTGGATCAAAAAATTAAGAAAATTTGATATCCAGGTAAGTCCAAGGAACTGTGGCTCAAACCACCATGTTGCCAAAGGCAATGAGAAACAGTTGGTTCTCAGAGGAGTTAATTTCGTGCAAGAAGACCTTCAGGATCTTTTGCGCACCGCAAGTTCCCTTAAATTGTTAACGTGTATAGGCATGACCCAGAAACACTGGCTTTGTCTATCATCATTGAAATCACTCACTATATCAAATTGTAATAATATCACCTGTTTGATAAGTGACGAAGGAAGTTCCTTGGAATTGTTTCCTAGTCTACAGAACCTGGTACTTGATCATTTGGAAAATTTAGACACTATTTCGCAGCTACTCTCGAGAGGCAAATGCCTTGGAAATCTGAAGACCATTCAAGTTTTGGATTGCCCAAAGTTAAAAGGAACCATTTCATATGCGATGCTTCGTCGTGTTCAAAAGCTTGAAGAAATAAAGGTAAGTGGTTGTAAAAACATGTCTTATATCATCAAATCAGGGGAGCATGGAGAAACTCTTCCAAATTTGAGGGTAATAGAGATACGTAACATGAACAATTTGAGTACGATCTGCAATAAAAAAACAGCTTTCCCAGCATTGCAGCGTATTGAAGTTTCAGATTGCTCCGAATTGAAGAAACTTCCTCTTGAGATCTCCAATTTGTCTAGACTGAAAGAAATTAGAGGTGACCTCAAGTGGTGGAACAGTTTACAATGGGATGATGGCGTTAAGAACATCTTTCTCCAACACTTTCAACCAAACCCCGCGGAAAGCTGCTCAAGAAAGAGAAAATACAAGTAA | 2904 | 39.74 | MGAITSAVIMDAITSVVIDGTKTLIKFTCSRIKTISEYEDNIRDLREEIVNLTSKKMEIEEDVTLAKLEGKEPKLQVKEYLKNVSQVEKDVMPLLAMADEYADGWGSSIMHQYQHCCRVAKQLDLVKGLNSIHFETVAPETWSPIKAVEEMAVPSLVGQRAKSDLKKLLEILNRNDIIKIAVWGKGGIGKTTLVKNLNNELYFSHPHTFAIIIWVQASRRLNLSNIQSQIAKRIHLKPEPRDTPHSLSNRILRRLKKMKILLILDDVWEKVDLDAVGIPSRDPCCKILLTTRSFDVCRHMAVDESFELNTMCEVDAWDLFVHSAGPVLNLDGIESPARKIVAGLRGLPLAIKTLGKSMRDRPQMEVWRNACLTWHCSSPLFKNIENEVFGTMATSYHFLPSKILKQCFLFCSMYPASFSIDVHELILCWLSDGLINENQSIKDALNYGIALVEHLKDSCLLDQDSEGTVKMHDMFRELALLLSKSEELYGFHCQPGHPFYQMPQESSRRVSFTRCRIKDLPELSKYSQLTVLFLQGNPIQNIPDDFFQNLNSLRVLNLSETHITSLPSSFLCLHELRSLFLRSCPLKKLPSFETLSKLLVLDVSSTKITELSKGFRSLRSLRELNLSNTEYLKKIVAGSISGLSSLETLDVSFSAYNWNPKIGTYKRSTFDELLSLDHLSVLKIRLDFVEDLASASSWIKKLRKFDIQVSPRNCGSNHHVAKGNEKQLVLRGVNFVQEDLQDLLRTASSLKLLTCIGMTQKHWLCLSSLKSLTISNCNNITCLISDEGSSLELFPSLQNLVLDHLENLDTISQLLSRGKCLGNLKTIQVLDCPKLKGTISYAMLRRVQKLEEIKVSGCKNMSYIIKSGEHGETLPNLRVIEIRNMNNLSTICNKKTAFPALQRIEVSDCSELKKLPLEISNLSRLKEIRGDLKWWNSLQWDDGVKNIFLQHFQPNPAESCSRKRKYK | 967 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aann4g00898 | 967 | Pfam | Leucine rich repeat | 528 | 586 | IPR001611 | GO:0005515(InterPro) | |
| Aann4g00898 | 967 | Gene3D | Ribonuclease Inhibitor | 500 | 718 | IPR032675 | - | |
| Aann4g00898 | 967 | ProSiteProfiles | Leucine-rich repeat profile. | 528 | 549 | IPR001611 | GO:0005515(InterPro) | |
| Aann4g00898 | 967 | Gene3D | - | 396 | 480 | IPR036388 | - | |
| Aann4g00898 | 967 | Pfam | NB-ARC domain | 164 | 371 | IPR002182 | GO:0043531(InterPro) | |
| Aann4g00898 | 967 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 162 | 411 | IPR027417 | - | |
| Aann4g00898 | 967 | SMART | LRR-typ-2 | 550 | 572 | IPR003591 | - | |
| Aann4g00898 | 967 | SMART | LRR-typ-2 | 595 | 617 | IPR003591 | - | |
| Aann4g00898 | 967 | SMART | LRR-typ-2 | 573 | 594 | IPR003591 | - | |
| Aann4g00898 | 967 | SMART | LRR-typ-2 | 526 | 549 | IPR003591 | - | |
| Aann4g00898 | 967 | FunFam | Probable disease resistance protein At1g61300 | 140 | 305 | - | - | |
| Aann4g00898 | 967 | Gene3D | - | 146 | 305 | IPR027417 | - | |
| Aann4g00898 | 967 | FunFam | Probable disease resistance protein At1g63360 | 396 | 481 | - | - | |
| Aann4g00898 | 967 | SUPERFAMILY | L domain-like | 469 | 926 | - | - | |
| Aann4g00898 | 967 | PRINTS | Disease resistance protein signature | 254 | 268 | - | - | |
| Aann4g00898 | 967 | PRINTS | Disease resistance protein signature | 616 | 632 | - | - | |
| Aann4g00898 | 967 | PRINTS | Disease resistance protein signature | 344 | 358 | - | - | |
| Aann4g00898 | 967 | PRINTS | Disease resistance protein signature | 179 | 194 | - | - | |
| Aann4g00898 | 967 | ProSiteProfiles | Leucine-rich repeat profile. | 552 | 573 | IPR001611 | GO:0005515(InterPro) | |
| Aann4g00898 | 967 | PANTHER | NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED | 25 | 918 | IPR050905 | - | |
| Aann4g00898 | 967 | Gene3D | Ribonuclease Inhibitor | 765 | 938 | IPR032675 | - | |
| Aann4g00898 | 967 | Gene3D | - | 311 | 395 | IPR042197 | - | |
| Aann4g00898 | 967 | Coils | Coil | 35 | 62 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aann4g00898 | K13459 | disease resistance protein RPS2 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 13420 | Aann | Aann4g00160 | Aann-Chr4:13049533 | Aann4g00898 | Aann-Chr4:53325521 | |
| 13855 | Aann | Aann4g00898 | Aann-Chr4:53325521 | Aann7g03966 | Aann-Chr7:120383387 | |
| 21593 | Aann | Aann6g02929 | Aann-Chr6:81947406 | Aann4g00898 | Aann-Chr4:53325521 | |
| 37419 | Aann | Aann4g00898 | Aann-Chr4:53325521 | Aann7g03941 | Aann-Chr7:119956251 |