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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00909 ATGTTCGAGTCAATGGATGCAACTTCAACATTGGATAAAAAAGAACGATTAAACGTGGAACAACATTGCTTGGCTCGAGACGTAGTCAAGATCATAGCATGTGAAGGTAAAGAAAGAGTTGAAAGACATGAGCTTTTCAAGAAGAGGTCAAGGTTAACTATGGCGGGGTATAAACAGTATCCGTTAAGTGGGTATGTAAATTCGGTTATCAGGGATTTGCTAAAGTGCTACTCGAAGCATTATACATTGGTGGAAGAAGATGGAGCTATGTTGTTGGGTTGGAAAGAAAGAAATCTTATATCAGCATCTGCTTGGCATTGA 321 39.25 MFESMDATSTLDKKERLNVEQHCLARDVVKIIACEGKERVERHELFKKRSRLTMAGYKQYPLSGYVNSVIRDLLKCYSKHYTLVEEDGAMLLGWKERNLISASAWH 106
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00909 106 Pfam GRAS domain family 1 105 IPR005202 -
Aann4g00909 106 ProSiteProfiles GRAS family profile. 1 106 IPR005202 -
Aann4g00909 106 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 105 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00909 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
13862 Aann Aann4g00909 Aann-Chr4:53834065 Aann5g00948 Aann-Chr5:24594310
37421 Aann Aann4g00909 Aann-Chr4:53834065 Aann3g03134 Aann-Chr3:131783784
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g00158 . 1 479 GRAS Transcription Factor family AT1G50420 62.63 0.0 593.0
Aann1g01636 . 258 467 GRAS Transcription Factor family AT3G03450 28.636 2.26e-15 75.9
Aann1g02347 . 91 713 GRAS Transcription Factor family AT2G37650 52.019 0.0 617.0
Aann1g02912 . 40 444 GRAS Transcription Factor family AT1G55580 49.029 5.70e-122 359.0
Aann1g03876 ACH 102 510 GRAS Transcription Factor family AT3G13840 51.402 1.39e-151 438.0
Aann1g04199 ACH 29 484 GRAS Transcription Factor family AT4G36710 48.109 1.46e-131 389.0
Aann1g04294 . 322 385 GRAS Transcription Factor family AT3G60630 54.688 1.60e-21 84.7
Aann1g05914 . 45 478 GRAS Transcription Factor family AT1G50420 37.3 3.40e-102 310.0
Aann2g02119 . 147 505 GRAS Transcription Factor family AT1G66350 26.842 6.62e-19 87.8
Aann2g02120 . 73 515 GRAS Transcription Factor family AT5G17490 23.913 3.25e-20 91.7
Aann2g02123 . 134 445 GRAS Transcription Factor family AT1G55580 24.138 3.11e-14 72.8
Aann2g02745 . 27 529 GRAS Transcription Factor family AT1G14920 48.35 4.31e-160 465.0
Aann2g03609 ACH 1 510 GRAS Transcription Factor family AT3G13840 46.717 5.85e-146 428.0
Aann2g04230 . 150 507 GRAS Transcription Factor family AT1G66350 31.034 2.30e-57 197.0
Aann2g04820 ACH 4 767 GRAS Transcription Factor family AT1G07530 47.348 0.0 646.0
Aann2g05438 . 276 650 GRAS Transcription Factor family AT3G54220 54.233 4.54e-143 424.0
Aann3g00539 . 13 409 GRAS Transcription Factor family AT3G49950 44.39 3.40e-116 344.0
Aann3g00902 . 1 584 GRAS Transcription Factor family AT5G66770 52.167 1.97e-178 514.0
Aann3g01065 . 1 335 GRAS Transcription Factor family AT4G37650 51.404 2.71e-104 318.0
Aann3g01080 . 11 409 GRAS Transcription Factor family AT3G49950 61.111 0.0 520.0
Aann3g03134 ACH 30 640 GRAS Transcription Factor family AT5G52510 42.813 7.46e-132 399.0
Aann3g03560 ACH 54 713 GRAS Transcription Factor family AT2G37650 45.852 0.0 543.0
Aann3g03840 ACH 175 640 GRAS Transcription Factor family AT5G52510 46.444 4.72e-119 363.0
Aann3g04402 . 224 767 GRAS Transcription Factor family AT1G07530 47.61 7.14e-176 512.0
Aann3g04403 ACH 70 159 GRAS Transcription Factor family AT2G37650 41.111 5.93e-15 70.1
Aann3g04893 ACH 37 486 GRAS Transcription Factor family AT4G36710 47.548 3.22e-134 397.0
Aann4g00742 . 147 506 GRAS Transcription Factor family AT1G66350 36.951 4.28e-66 221.0
Aann4g00909 . 384 489 GRAS Transcription Factor family AT5G48150 62.264 6.19e-41 139.0
Aann4g01097 . 20 400 GRAS Transcription Factor family AT5G41920 55.325 3.99e-141 416.0
Aann4g01284 . 34 490 GRAS Transcription Factor family AT5G48150 58.874 0.0 531.0
Aann4g02961 ACH 103 555 GRAS Transcription Factor family AT4G00150 52.772 1.14e-159 466.0
Aann4g04100 ACH 4 767 GRAS Transcription Factor family AT1G07530 44.041 0.0 590.0
Aann4g04102 ACH 39 767 GRAS Transcription Factor family AT1G07530 46.196 0.0 597.0
Aann4g04861 . 73 714 GRAS Transcription Factor family AT2G37650 52.381 0.0 650.0
Aann5g00558 . 23 444 GRAS Transcription Factor family AT1G55580 46.651 1.07e-120 357.0
Aann5g00948 . 43 490 GRAS Transcription Factor family AT5G48150 68.071 0.0 621.0
Aann5g01130 ACH 161 529 GRAS Transcription Factor family AT1G14920 35.623 1.92e-75 246.0
Aann5g02475 . 266 555 GRAS Transcription Factor family AT4G00150 44.333 1.39e-77 244.0
Aann5g04764 . 21 530 GRAS Transcription Factor family AT1G14920 62.857 0.0 649.0
Aann6g00617 . 347 656 GRAS Transcription Factor family AT1G63100 65.714 4.41e-143 417.0
Aann6g00618 . 30 307 GRAS Transcription Factor family AT1G63100 36.364 1.29e-21 92.0
Aann6g00794 . 205 555 GRAS Transcription Factor family AT4G00150 48.108 1.00e-104 327.0
Aann6g00901 . 170 547 GRAS Transcription Factor family AT3G03450 27.692 8.13e-50 177.0
Aann6g00902 . 170 546 GRAS Transcription Factor family AT3G03450 29.306 1.52e-54 189.0
Aann6g00903 . 170 547 GRAS Transcription Factor family AT3G03450 28.792 1.02e-53 189.0
Aann6g03621 . 141 530 GRAS Transcription Factor family AT4G37650 53.5 1.12e-141 413.0
Aann6g04273 ACH 204 555 GRAS Transcription Factor family AT4G00150 57.377 9.20e-142 422.0
Aann7g01061 . 45 545 GRAS Transcription Factor family AT3G03450 63.724 0.0 666.0
Aann8g00707 . 31 405 GRAS Transcription Factor family AT5G41920 65.116 3.90e-178 502.0
Aann8g00887 . 41 582 GRAS Transcription Factor family AT2G01570 58.389 0.0 652.0
Aann8g02008 ACH 20 766 GRAS Transcription Factor family AT1G07530 46.144 0.0 598.0
Aann8g02009 ACH 222 764 GRAS Transcription Factor family AT1G07530 46.364 2.71e-168 496.0
Aann8g02012 ACH 316 767 GRAS Transcription Factor family AT1G07530 51.327 6.31e-163 482.0
Aann8g02699 . 18 592 GRAS Transcription Factor family AT1G21450 55.461 0.0 609.0
Aann8g02747 . 1 525 GRAS Transcription Factor family AT4G17230 51.607 0.0 539.0
Aann9g01264 . 241 353 GRAS Transcription Factor family AT1G07530 47.009 4.05e-19 81.3
Aann9g01458 . 154 519 GRAS Transcription Factor family AT5G17490 31.841 9.29e-43 155.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aann GRAS 8.7e-29 CL0063 TF GRAS