AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00957 ATGGAATTTGATCCAAGAAATCCGTTACAAAAACACAATATCAGAGATCAAGCCGCAATACGTAAATACTTCGAACTCGAAGTTGATTTCATGGTTTCTCGTGATTACTATCAACAACAGAAGTTTATCGCAATCAGATCGATTGCCATTTCATATATCCAAAAGTGTACGCGTAATTATGTTGATGCGTTTGTTCCGTATCTTGCTATGACGTTTGTTGATCAATTCTTGTCGAGGATGAATGATATACCTGTTATTTATTGCGGTGAAGGTGTTGAAAGAAATATAAAGATGTTTGTGTTCTGTTGCGTTTTGATTGCTTGTAAAATGCGCTATTCATATTTCTCGTTTAGGCGATTCTTGAACGAGCACCGAGTTGCAGAAGTGAAGGATATTCTTGCGATGGAGCTTCGGATTTTGGAAGGTTTAGAATGGAGGGTACGACCAGTGACCGCCATAACCTTCTTGTATTTCTTCCTTCCTTTGCTCACTACAAAAAGTGAGCAGCAATCGCCACCCTTCACGCTGATACCTCAGATCATTGTTGCCATTCAAAAAGATATTAGATTCACGGAGTTTAGGCCTTCTACAATTGCGGCGTCAGCGATTTTAGTAACATCCTACCACAGTTTACAGCCAAAGAAGCATTCAAAGTTCAGAAAAGAGATTTTCAGATTAAACTTGGTTCAACAGATTGAAGTGGAGGAATGTTTTAGTGAACTGAAGGAACATGTCATACCAGACTATATACTCAATCCTGAGAAACGCCAAAGGGTGTATAAAGAACCGTGCAGATTGTTGCGAGTGAGCCGAAACAAAGGAAAAGAGCGACTGATCGAGGATCTTTCCTATGAAGATGTGGCTCAACCAAAGTATGCATCTAAGATTATAAAAGTTGTAGACGAACATGATGATCAGATTGATATGGAATTTGATACCAACTGGGTCGAACCCGAATCATATGTTGAAGAGGAGAGGTACAGCCCAATTCAAGGACTTTTCGACTGCTTGTTGCCTATTTTACTCAAATGTTTAGGATATGATTTTGGTGACAGATTCGACTGA 1065 39.34 MEFDPRNPLQKHNIRDQAAIRKYFELEVDFMVSRDYYQQQKFIAIRSIAISYIQKCTRNYVDAFVPYLAMTFVDQFLSRMNDIPVIYCGEGVERNIKMFVFCCVLIACKMRYSYFSFRRFLNEHRVAEVKDILAMELRILEGLEWRVRPVTAITFLYFFLPLLTTKSEQQSPPFTLIPQIIVAIQKDIRFTEFRPSTIAASAILVTSYHSLQPKKHSKFRKEIFRLNLVQQIEVEECFSELKEHVIPDYILNPEKRQRVYKEPCRLLRVSRNKGKERLIEDLSYEDVAQPKYASKIIKVVDEHDDQIDMEFDTNWVEPESYVEEERYSPIQGLFDCLLPILLKCLGYDFGDRFD 354
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00957 354 SUPERFAMILY Cyclin-like 149 239 IPR036915 -
Aann4g00957 354 Pfam Cyclin, N-terminal domain 21 147 IPR006671 -
Aann4g00957 354 Gene3D - 24 239 - -
Aann4g00957 354 CDD CYCLIN-AtCycD-like-rpt2 150 238 - -
Aann4g00957 354 PANTHER CYCLINS 17 222 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Aann4g00957 354 Gene3D - 33 148 - -
Aann4g00957 354 SUPERFAMILY Cyclin-like 16 147 IPR036915 -
Aann4g00957 354 Pfam Cyclin, C-terminal domain 151 245 IPR004367 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00957 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:55833790 Aann1g04492 Aann-Chr1:97528388 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g00995 . 179 410 Core Cell Cycle gene family AT3G11520 40.249 3.55e-44 152.0
Aann1g01141 . 14 304 Core Cell Cycle gene family AT1G76540 25.806 3.39e-28 111.0
Aann1g01566 ACH 1 80 Core Cell Cycle gene family AT2G27970 90.244 9.29e-53 157.0
Aann1g04471 ACH 1 353 Core Cell Cycle gene family AT5G43080 57.027 1.36e-146 417.0
Aann1g04492 . 18 286 Core Cell Cycle gene family AT4G34160 48.592 1.51e-80 248.0
Aann1g05062 . 19 304 Core Cell Cycle gene family AT1G76540 25.223 2.87e-26 106.0
Aann1g05142 . 21 333 Core Cell Cycle gene family AT5G10270 47.634 4.25e-87 275.0
Aann1g05283 . 18 357 Core Cell Cycle gene family AT5G10270 53.079 3.75e-116 353.0
Aann1g05601 . 1 459 Core Cell Cycle gene family AT1G80370 50.321 6.86e-139 404.0
Aann1g05711 ACH 62 365 Core Cell Cycle gene family AT5G67260 46.835 3.73e-92 278.0
Aann1g05792 . 137 222 Core Cell Cycle gene family AT5G48820 46.512 1.01e-17 74.7
Aann1g06012 . 31 246 Core Cell Cycle gene family AT5G64960 51.389 3.80e-73 228.0
Aann1g06013 . 277 356 Core Cell Cycle gene family AT5G10270 37.5 2.12e-12 59.3
Aann1g06405 . 241 289 Core Cell Cycle gene family AT5G43080 55.102 3.15e-16 69.3
Aann2g00398 . 144 198 Core Cell Cycle gene family AT2G26760 65.455 1.94e-23 90.1
Aann2g00751 . 1 294 Core Cell Cycle gene family AT3G48750 85.714 0.0 535.0
Aann2g01313 . 175 376 Core Cell Cycle gene family AT3G11520 28.372 2.33e-21 94.7
Aann2g01906 . 6 391 Core Cell Cycle gene family AT1G18040 76.744 0.0 598.0
Aann2g02847 . 257 331 Core Cell Cycle gene family AT2G26760 61.842 9.46e-26 95.9
Aann2g03237 . 1 294 Core Cell Cycle gene family AT3G48750 35.235 1.16e-60 195.0
Aann2g04298 . 96 195 Core Cell Cycle gene family AT1G49620 48.113 2.06e-24 92.8
Aann2g04344 ACH 14 282 Core Cell Cycle gene family AT4G34160 53.472 4.43e-100 300.0
Aann2g04371 . 6 354 Core Cell Cycle gene family AT5G43080 47.645 5.59e-110 323.0
Aann2g04412 . 74 291 Core Cell Cycle gene family AT1G70210 45.333 5.23e-53 174.0
Aann2g05232 ACH 98 239 Core Cell Cycle gene family AT5G27620 28.477 3.20e-10 57.8
Aann2g05272 ACH 1 221 Core Cell Cycle gene family AT5G48820 42.731 1.03e-43 143.0
Aann3g00205 . 18 470 Core Cell Cycle gene family AT5G63610 77.039 0.0 717.0
Aann3g00340 . 1 504 Core Cell Cycle gene family AT5G10270 74.319 0.0 735.0
Aann3g00373 . 18 367 Core Cell Cycle gene family AT5G10270 50.712 2.62e-114 352.0
Aann3g00716 ACH 12 425 Core Cell Cycle gene family AT2G17620 59.242 4.26e-153 438.0
Aann3g01105 ACH 15 365 Core Cell Cycle gene family AT5G67260 44.384 3.71e-90 273.0
Aann3g01310 . 18 366 Core Cell Cycle gene family AT5G10270 46.705 6.73e-111 337.0
Aann3g02408 . 18 439 Core Cell Cycle gene family AT5G10270 44.165 3.20e-119 363.0
Aann3g02620 . 144 865 Core Cell Cycle gene family AT3G12280 65.342 0.0 923.0
Aann3g02621 . 16 982 Core Cell Cycle gene family AT3G12280 67.857 0.0 1345.0
Aann3g02699 . 1 288 Core Cell Cycle gene family AT3G48750 37.201 2.20e-63 202.0
Aann3g02710 . 17 372 Core Cell Cycle gene family AT5G10270 44.505 2.36e-94 298.0
Aann3g05022 . 7 323 Core Cell Cycle gene family AT4G37630 34.242 3.26e-52 172.0
Aann3g05032 . 12 304 Core Cell Cycle gene family AT1G76540 30.99 1.23e-40 145.0
Aann3g05052 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 2.81e-43 151.0
Aann3g05289 . 18 357 Core Cell Cycle gene family AT5G10270 45.0 3.60e-98 306.0
Aann3g06056 . 1 430 Core Cell Cycle gene family AT1G76310 56.621 9.86e-158 450.0
Aann4g00760 . 21 647 Core Cell Cycle gene family AT1G16330 42.511 7.04e-156 462.0
Aann4g00957 . 1 255 Core Cell Cycle gene family AT4G03270 29.434 1.44e-22 94.7
Aann4g01020 . 18 390 Core Cell Cycle gene family AT5G10270 50.802 8.43e-120 365.0
Aann4g01731 ACH 47 348 Core Cell Cycle gene family AT5G67260 49.536 8.32e-96 288.0
Aann4g02193 . 20 307 Core Cell Cycle gene family AT1G76540 34.138 2.70e-55 182.0
Aann4g03261 . 18 497 Core Cell Cycle gene family AT1G02970 53.024 5.84e-176 502.0
Aann4g03906 . 1 317 Core Cell Cycle gene family AT5G27620 58.991 1.06e-135 386.0
Aann4g04233 . 151 377 Core Cell Cycle gene family AT2G26760 55.947 2.01e-90 270.0
Aann4g04235 . 24 377 Core Cell Cycle gene family AT2G26760 52.368 1.15e-124 362.0
Aann4g04614 ACH 99 239 Core Cell Cycle gene family AT5G27620 28.0 2.16e-12 63.9
Aann4g04949 ACH 1 222 Core Cell Cycle gene family AT5G48820 43.805 2.79e-47 153.0
Aann4g05220 . 142 183 Core Cell Cycle gene family AT2G17620 71.429 7.05e-12 61.6
Aann5g00010 . 139 188 Core Cell Cycle gene family AT2G17620 62.0 5.20e-14 62.4
Aann5g00024 . 142 183 Core Cell Cycle gene family AT2G17620 71.429 9.11e-13 58.2
Aann5g00059 . 2 309 Core Cell Cycle gene family AT3G54180 81.818 0.0 528.0
Aann5g00155 . 40 338 Core Cell Cycle gene family AT2G22490 46.535 8.81e-78 240.0
Aann5g00282 . 21 390 Core Cell Cycle gene family AT5G10270 43.915 1.07e-100 313.0
Aann5g01051 . 18 357 Core Cell Cycle gene family AT5G10270 51.613 1.70e-114 347.0
Aann5g01438 . 18 364 Core Cell Cycle gene family AT5G10270 46.418 7.76e-107 330.0
Aann5g01802 . 257 331 Core Cell Cycle gene family AT2G26760 61.842 9.46e-26 95.9
Aann5g01830 . 2 313 Core Cell Cycle gene family AT4G37630 35.127 7.42e-47 158.0
Aann5g01954 . 20 459 Core Cell Cycle gene family AT1G44110 58.351 0.0 522.0
Aann5g02473 . 2 309 Core Cell Cycle gene family AT3G54180 81.818 0.0 528.0
Aann5g03312 . 18 363 Core Cell Cycle gene family AT5G10270 50.72 1.74e-118 358.0
Aann5g03366 . 13 434 Core Cell Cycle gene family AT5G25380 49.02 5.34e-138 402.0
Aann5g04399 . 17 371 Core Cell Cycle gene family AT5G64960 44.231 2.16e-94 300.0
Aann5g04924 . 20 290 Core Cell Cycle gene family AT1G66750 31.013 2.11e-29 119.0
Aann5g04944 . 8 302 Core Cell Cycle gene family AT3G54180 27.059 1.96e-13 69.7
Aann5g05614 . 11 315 Core Cell Cycle gene family AT1G20930 85.246 0.0 551.0
Aann5g05615 . 6 315 Core Cell Cycle gene family AT1G20930 79.355 0.0 526.0
Aann6g00015 . 18 364 Core Cell Cycle gene family AT5G10270 47.443 1.24e-107 331.0
Aann6g00157 . 1 294 Core Cell Cycle gene family AT3G48750 37.248 1.29e-64 208.0
Aann6g00340 . 6 434 Core Cell Cycle gene family AT5G25380 49.364 6.82e-146 422.0
Aann6g01899 ACH 1 80 Core Cell Cycle gene family AT2G27970 90.244 7.86e-52 155.0
Aann6g02387 ACH 1 220 Core Cell Cycle gene family AT5G48820 38.793 1.53e-38 130.0
Aann6g03497 . 2 155 Core Cell Cycle gene family AT4G28980 30.0 1.49e-12 69.3
Aann6g03870 . 22 182 Core Cell Cycle gene family AT5G06150 38.462 3.94e-18 78.6
Aann6g03871 . 151 377 Core Cell Cycle gene family AT2G26760 64.912 1.99e-107 313.0
Aann6g04444 . 20 309 Core Cell Cycle gene family AT1G76540 35.274 4.68e-56 187.0
Aann6g04482 . 7 294 Core Cell Cycle gene family AT3G48750 56.25 1.91e-110 317.0
Aann6g04486 . 266 294 Core Cell Cycle gene family AT3G48750 72.414 1.61e-09 49.7
Aann6g04487 . 1 265 Core Cell Cycle gene family AT3G48750 65.799 7.02e-129 367.0
Aann6g04491 . 158 294 Core Cell Cycle gene family AT3G48750 65.693 8.91e-65 197.0
Aann6g04492 . 1 106 Core Cell Cycle gene family AT3G48750 63.208 2.87e-42 138.0
Aann7g00353 ACH 1 220 Core Cell Cycle gene family AT5G48820 43.111 6.26e-38 129.0
Aann7g01265 ACH 36 429 Core Cell Cycle gene family AT1G20610 54.061 1.48e-143 413.0
Aann7g02116 ACH 18 304 Core Cell Cycle gene family AT1G76540 28.939 8.51e-27 110.0
Aann7g02320 . 1 505 Core Cell Cycle gene family AT5G10270 73.981 0.0 734.0
Aann7g03313 . 8 478 Core Cell Cycle gene family AT4G28980 53.797 1.75e-171 489.0
Aann7g03687 . 48 421 Core Cell Cycle gene family AT5G64960 44.089 2.65e-110 332.0
Aann7g03908 . 1 294 Core Cell Cycle gene family AT3G48750 36.242 4.64e-65 209.0
Aann8g00031 . 20 312 Core Cell Cycle gene family AT1G76540 34.576 4.55e-56 186.0
Aann8g00412 . 4 237 Core Cell Cycle gene family AT5G02110 31.818 7.28e-27 107.0
Aann8g00513 . 1 294 Core Cell Cycle gene family AT3G48750 38.047 1.73e-66 210.0
Aann8g01710 . 283 332 Core Cell Cycle gene family AT2G26760 52.0 1.38e-10 52.4
Aann8g02505 . 76 331 Core Cell Cycle gene family AT2G22490 45.283 7.99e-65 207.0
Aann9g00198 . 174 225 Core Cell Cycle gene family AT4G34160 49.057 8.88e-12 57.4
Aann9g00321 . 1 294 Core Cell Cycle gene family AT3G48750 35.548 9.04e-59 190.0
Aann9g00935 ACH 9 353 Core Cell Cycle gene family AT5G43080 57.637 4.40e-143 407.0
Aann9g01407 . 18 364 Core Cell Cycle gene family AT5G10270 48.433 3.36e-104 325.0