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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00960 ATGTCATTTTACATATTTCAGTTAATCCAAAAAAAGACTTCAATTTTAACTCCCATGGCTGCTGCCTTCACATTTTCACCCAAAACTCATCCCTCAAGGGAGTTGAGTAGTACCAGTGAAGTGTTGTTGTCAAAGACAAAAGGGATAAGAACAAATTCAATTAGATATGAAATTAAGGTCACGTGCCAGGCAGCAGCAAGTTTCTCAGCTATTGCTGACGTGGAAAAGCGGAAGTTAATGAAGATGTTGTTGTTTGGTGCTGTTGTTGGTTTACCTGCTGCTGCTGCTGGTTTGTTGGTTCCTTATACCGACTGTTTTGCTACACCTGGTTCAGGCAGTTCCAAAGGTGGCACTGTCGCCAAAGATGAGTTTAGTAACGACATCATTGCATCAGAATGGCTAAAAACCCATGTACCTGGTGAAAGAACTCTTGCTCATGGCTTAAAGGGACATCCTACGTACCTTATGGTTGAGAACAACAGAACGTTTGCAACATATGGGATTAATGTGGTATGCACCCATTTAGGGTGTATCGTGCCATGGAACACGGTGGAGAAGAAGTTTGTATGCCCCTGCCACGGTTCTGAGTTTGATAAAGAGGGCAAAGTTGTCAAGGGTCCTGCTCCTCTGTCTTTGGAAATGGCTCGTGTGGATATAGATGATGGCAAAGTGGTGTTTGCTCCATGGAGGGAAACCGATTTTAGAACAGATTTGGATAGAGTTAAGAGAAGATTTGAGGCATGA 744 43.01 MSFYIFQLIQKKTSILTPMAAAFTFSPKTHPSRELSSTSEVLLSKTKGIRTNSIRYEIKVTCQAAASFSAIADVEKRKLMKMLLFGAVVGLPAAAAGLLVPYTDCFATPGSGSSKGGTVAKDEFSNDIIASEWLKTHVPGERTLAHGLKGHPTYLMVENNRTFATYGINVVCTHLGCIVPWNTVEKKFVCPCHGSEFDKEGKVVKGPAPLSLEMARVDIDDGKVVFAPWRETDFRTDLDRVKRRFEA 247
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00960 247 SUPERFAMILY ISP domain 121 237 IPR036922 GO:0051537(InterPro)
Aann4g00960 247 Gene3D Single helix bin 62 108 - -
Aann4g00960 247 FunFam Cytochrome b6-f complex iron-sulfur subunit 109 241 - -
Aann4g00960 247 Pfam Rieske [2Fe-2S] domain 150 210 IPR017941 GO:0051537(InterPro)
Aann4g00960 247 Gene3D - 109 243 IPR036922 GO:0051537(InterPro)
Aann4g00960 247 PRINTS Rieske 2Fe-2S subunit signature 167 178 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Aann4g00960 247 PRINTS Rieske 2Fe-2S subunit signature 200 212 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Aann4g00960 247 PRINTS Rieske 2Fe-2S subunit signature 188 200 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Aann4g00960 247 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 130 226 IPR017941 GO:0051537(InterPro)
Aann4g00960 247 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 57 230 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00960 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Event-related genes

Select Gene_1 Gene_2 Event_name
369 Aann1g02496 Aann4g00960
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:73939234 Aann4g00960 Aann-Chr4:55848143 dispersed
Aann Aann-Chr4:55840032 Aann4g00960 Aann-Chr4:55848143 proximal