AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01001 ATGGCAGCTCGTTTGTTAGCACATGAGGTATCCGATCTTTGTCTCGGCAAGCCCTCGATCACCTCACTCCCAATCTCCGCGACCATTCACGACGCCTTAAACGAACTCAAATCATCTGAAGACATTCACATAAGTATCTGGAATTGCACCCACAACCATTTAGTAGTATCTGATGATCAACTCATTAGTGAGTGCCGATGTGTTGGAAAAATATGCATGGTCGATATCATATGTTATCTTTGCAAAGAGGACAACATCTCTGATCCTTCGACAGCACTCAAGTCTCCTGTTTCGGTCTTGATGTCACATGGTCCTGGTGTTATTCAACATGTCGAACCGTCCTTCAGTTTGCTTGAAGCAATTGATCTTATGATCAATGGTGCACAAAACCTCGTGATACCGATAAAAAACAAAACCACAAAACGAAAACAGCTTCGGCAATACCCAATGAATGCTCCTACGACTCACGTGGGTGGTCGTGAGTTTTGTTGGCTAACACAAGAAGATGTTGTTCGGTTTCTATTAAGCTCAATCGGTTTATTCTCCCCAACTGCGGCTTTTTCAATCGAGTCACTTGGTATTATCACCACTGACTTCCTCACTATCAACTACCATTCGCCCGCATCTAAAGCGGTGCATGCAATCGCATCCTCTCTCGTGGAGCAAACATCTGTCGCGGTTATTGACGATGATGGTGTGTTGATAGGGGAAATATCGCCTTTTACGCTAAATTATTGTGATGAAATGGTTGCGGCTGCTATTACAACGTTGTCTGCGGGGGATTTGATGGCGTATATAGATTGTGGGGGTACACCAGAATATATTATAAAGCTGGTGGAAGAGAGATTGAAAGAGATGAATTTAACTGGAATGTTGGAGGAGTTTTCAGTTTACTCCTCCGGCATTCCATACTATAGTAATAACTCGTCCTCAGATGAGGAATCGTTACCTTCACCAACCACAACTAGGTCCGGAGGAAGGTACAATCGGTCAAGTAGCTACTCCGCAAGAATAATGAGGAGAGCGGAGGCTATTGTGTGCTATCCTGGAAGCTCGTTGGTGGCGGTAATGATTCAGGTGATTGCACATCGTGTGAGTTACGTATGGGTGATTGAAGAGGATTGTAGCGTGGTCGGAATCGTGAGGTTTTGCGGCATGTTGGAAGTTTTTCGAGAACATTTAGAGCGTATGATTAACTAG 1200 44.25 MAARLLAHEVSDLCLGKPSITSLPISATIHDALNELKSSEDIHISIWNCTHNHLVVSDDQLISECRCVGKICMVDIICYLCKEDNISDPSTALKSPVSVLMSHGPGVIQHVEPSFSLLEAIDLMINGAQNLVIPIKNKTTKRKQLRQYPMNAPTTHVGGREFCWLTQEDVVRFLLSSIGLFSPTAAFSIESLGIITTDFLTINYHSPASKAVHAIASSLVEQTSVAVIDDDGVLIGEISPFTLNYCDEMVAAAITTLSAGDLMAYIDCGGTPEYIIKLVEERLKEMNLTGMLEEFSVYSSGIPYYSNNSSSDEESLPSPTTTRSGGRYNRSSSYSARIMRRAEAIVCYPGSSLVAVMIQVIAHRVSYVWVIEEDCSVVGIVRFCGMLEVFREHLERMIN 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01001 399 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 23 393 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Aann4g01001 399 SUPERFAMILY CBS-domain pair 186 395 IPR046342 -
Aann4g01001 399 MobiDBLite consensus disorder prediction 307 330 - -
Aann4g01001 399 SUPERFAMILY CBS-domain pair 5 138 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01001 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
2466 Aann4g01001 Aann5g00927
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr2:6481638 Aann4g01001 Aann-Chr4:56792392 dispersed
Aann Aann-Chr4:56792392 Aann4g02017 Aann-Chr4:84574711 wgd
Aann Aann-Chr4:56792392 Aann5g00927 Aann-Chr5:23825834 wgd