AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01012 ATGAGAGGAATTATTGGTAAATTTCCATCAAGTGATGGAAATGGTGAAGTTGGTAGTGCTAATGGGATCATAAAACACAACAGAAAATGCAAAGATGTTGTGTTTCTTGTCTTTTTTATTGCTTTTTGGGTTGCTATGATTGTTAACTCAAGTTTTGGGTTTAACCAAGGAAACCCTTTAAGGCTAAACTTTGGGTTGGATTATAAAGGAAACGTATGTGGAGGCAAACACAAAGATTTTAACCTCCAAGAATTGGAACTCAAATACTATGTTAATCCTAACCAAGTTTACCAAAGTGGGTCAAAGAATAGTGGAGTCAAACTGTCTAATGCCCGAACAATATGTTTGTTAGATTGTCCCATACCATCAGAAGATTCTCTAAATTGGGTTTGTGATTATCCAGAGGGTGATATTCGTCTTTCATTAGATGATTGGATCGATATGAATTATGATTATTTTGCTGACCTTACTCCTGAATTAAGAAACACTTCTCTTCAACTTCAAGGTCCTTGTTACCCTGTCATTTTTCCAAGCGTAAACGTTTATTGGACTTGCCAGTTTATTGACCGCCCATCAAATGTGTCCTTAACACATTGGAAGCAAATGAATGGTGTTAACATCAATGATGACATGGTCATAGATAAATCTATTCATAAAGCCATCAACGCCCGGTCTTCAGTTTTAAAGAGATATGTGGCTGATGTTGGAAAATCATGGCCAGTGTTGATTGTATGTGGTGGATTCTTGCCTCTATTTCTGTCGTTGCTATGGCTTTTAATGATTCGACATTTTGTTGCTGGAATGCCATGGGTTACCGTATTTTTCTTTAATGGTCTCATAATATCAGTCACGATGTTCTACTACATGAAAGCTGGATGGATTGGAGACGACGCTATCTCGCCCATCATTGGTGAACATGATCCATACTATCATGTTTCCGCGAGGGAGCAACATCATATCCGTGCTGCTGCTTTTCTCATGACATGTGTGATGATTGTTGCTGTTTTATCATCCATAGCTATTGTAAGGCGAATCCTCATGGCAACTTCAGTACTTAAGGTTGCAGCAAAGGTCATTGGAGAAGTTCATGCTCTCATAATATTTCCAGTCATACCATACCTAATCCTTGCGGTTTTTTACATGTTTTGGTTGTCGGCTGCCCTCCATCTTTTCAGTTCAGGTCAAATAGTCCGCAATGATTGCAGTACAAATTGCTGTGCTTATGATCTTAAAGCTAAAAGGGTTAGCTGTGATGATTGTTGTGGCTATAGCATCCATTACACCCCTCATATAGCAGCTTCAATTTTATTTCACTTATTTGGATGCTACTGGGCTACTCAATTTATCATAGCATGCTCTTCGACTGTGATTGCCGGTTCAGTCGCTTCATACTATTGGGCTCGTGGTGAATCTTCGACAAAGATTCCGTTTCTTCCAGTTTTCTCGTCAATGAAGCTACTCATACGGTACAGCCTTGGATCAGTGGCAATCGGGTCCTTGATTGTGTCATTTGTTGAGTCAACTCGCTTCATACTCGAGGCCATACGTCGCAGATTAAAAGTTGCTGACATCATGCCCGAAAGCTGGATTAAGAGGATGATGTTCCATACTTCTCGGTTCTGCATAAAGGGTATTGAATTGACCATCAAATCTGTAAACCGCAATGCATACATTATGATTGCTATAACCGGAAAAGGGTTTTTTAGAGCTTCTGAGATGGCAACAGATTTGATAATTAGTAACATTCTACGTATAGGCAAGGTGAATGTCATCGGGGATGTTATTCTCTTTCTTGGCAAGTTGTGCGTCAGTCTTGCAAGTGCACTTTTCGCGTTCCTTATGCTGGATACTCACAAATACAAATCATCCCATAACAAGATTACATCCCCGTTATTTCCCGTGCTAGTGTGCTGGGGTCTAGGATATATAGTGGCTACCCTCTTCTTTGCAGTGGTGGAAATGTCGATTGATACCATTATCCTATCATATTGCCAAGATGCAGAGGAGCATCAAGGAACCGCACATTATGCTCCTCCACTTTTAATTGAAACATTTGATGATCAAAATGAGGTGCAAAGAATTGGGCAATGA 2091 39.84 MRGIIGKFPSSDGNGEVGSANGIIKHNRKCKDVVFLVFFIAFWVAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLQELELKYYVNPNQVYQSGSKNSGVKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQMNGVNINDDMVIDKSIHKAINARSSVLKRYVADVGKSWPVLIVCGGFLPLFLSLLWLLMIRHFVAGMPWVTVFFFNGLIISVTMFYYMKAGWIGDDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPVIPYLILAVFYMFWLSAALHLFSSGQIVRNDCSTNCCAYDLKAKRVSCDDCCGYSIHYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSTKIPFLPVFSSMKLLIRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADIMPESWIKRMMFHTSRFCIKGIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGKVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYIVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDDQNEVQRIGQ 696
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01012 696 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 21 686 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Aann4g01012 696 Pfam Plasma-membrane choline transporter 326 668 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01012 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:84596054 Aann4g01012 Aann-Chr4:56966221 transposed
Aann Aann-Chr4:84598845 Aann4g01012 Aann-Chr4:56966221 transposed
Aann Aann-Chr4:56966221 Aann4g02021 Aann-Chr4:84593594 wgd