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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01033 ATGGGTCGGGTATTTTTGGTGGAGCTAGAAGGAAGAACTTACAAATGTAAATTTTGTAAAACTAATTTAGCTCTTGCTGAACATGTTGTATCAAGGGGTTTTCATTGCCGCAGAGGAAAAGCTTACCTGTTCAGCAACGTGGTGAATGTGACTGCTGGACCGATTGAGGAGCGGATGATGCTTTCAGGATTGCATACTGTTACAGATATATATTGTGTATGCTGTGGACAAATTGTTGGCTGGAAATATGAGACTGCACACGAGCAATCCCAGAAGTATAAAGAAGGCAAATTTGTTCTGGAAAGAGGAAGGATCATTGACGGACTTGATTCAGAATTTTACATTGATACTCGTCCAAGTTCAAGTGACGCTGAAGAAGCCTAA 384 40.89 MGRVFLVELEGRTYKCKFCKTNLALAEHVVSRGFHCRRGKAYLFSNVVNVTAGPIEERMMLSGLHTVTDIYCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIIDGLDSEFYIDTRPSSSDAEEA 127
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01033 127 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Aann4g01033 127 Pfam Yippee zinc-binding-DNA-binding -Mis18, centromere assembly 14 105 IPR004910 -
Aann4g01033 127 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01033 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr3:145076874 Aann4g01033 Aann-Chr4:57397643 dispersed
Aann Aann-Chr4:57397643 Aann6g00412 Aann-Chr6:27971407 dispersed
Aann Aann-Chr4:57397643 Aann3g03478 Aann-Chr3:136749074 transposed