AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01057 ATGTTCACCCTACCTTTTCGCTCAATTTCCCCACACCTCAAAATCCCTTTCAAATCACATACTCAATTCTTATCAAAACCCCATTTTGTCCATTATCATAATAACAAACATTCAGACACCTTAATTAAGATAGATTATGGTAGCACTCACTGTTTATGTTCGAATTCGGGCGAATTGGTTCTCGGTTCGAGCGAAGAGGAGTTCGATATGGAACTAGGAAGAATGTTGAGGTTGTTGCCTGAGGAAATGAGGCGTAAGGTTAATGAACATGAGGAGCTTCATCAATTGATTGAAGTTGTTATGGATTTGGGTCGGAAGCCGTTGGCGCGCTTTCCGTCTGGCGATTTTGTCTTGTCGGATGATTTGATTACTGTTGGTGATCTGGAACATGCTACTTCTTTGGTAGGTGATTTTGCTGTTGATAATCGAGCTGGGATCAGTAGGACTTTGCATCGAATTAGTGCTATTAGGAATCGTAAGGGGGTGATTATTGGGCTAACCTGTCGTGTTGGTCGAGCTGTATCGGGAAGTGCGAAATTATTGCAAGATTTGGTTAAAGATGGATCTTCTTTATTGCTTATTGGGCCTCCAGGAGTGGGAAAAACTACAATTATCAGGGATATAGCTCGAATGCTTGCAAATGATTATAGGAAACGTGTCATGATTGTTGACACCTCAAATGAAATAGGTGGAGATGGTGATATACCTCACTCTGGTATAGGTAATGCTAGACGGATGCAAGTTCCTGATACGGATATGCAACATAAGGTGTTGATAGAAGCAGTTGAAAATCATATGCCTCAAGTGATTGTAATTGATGAAATTGGCACAAAACTTGAAGCAGCAGCTGCAAGCACTATTGCACAACGTGGGATTCAGTTAGTTGCAACAGCTCATGGTATTACGATAGAGAATTTAGTGATGAATCCGTCGTTGGAGATGCTTGTTGGAGGAATACAGAGTGTGACATTAGGAGATGAAGAGGCGAATCGAAGGGGTGTACAGAAATCAGTGCTGGAGAGAAAAGGCCCATCTACTTTTGATTGTGCTGTGGAGATCATTTCCAGGCTTGAGTTGAGAGTTCATAGCAATCTGGAAGCAACAGTTGATGCTATTCTTTCTGGCCGTTCGCCAAACTACCAAGTTTGCAAGTTTAATCAGGGAGTGGAAAATATTACTTTACAAAGTGATCCAATTGCATATGATTCATTCATCAAGAAGAGTGTCACTACGATTGAAGGCATTCCACAATGGATTGATGAAAAGCGTACACCTGACAAACAAGTTTCTAAAGAATCTCAAAACGACCGAGAAAATACTTATGATAGACCACCCTTGTGTTTATTTCTGTATGGGGTCTCAGAGACAAGCGTATTACAAATATTTAAACAATTAAAGATGGAGTATGTTCTTGAATTTACGGAGAATATTAGTGAAGCAGATGCAATACTTGCTCTGCTGTCCAAAATCAAGAAAAATTCTCGGATTCAAGCTGCTGCACACTCTAATGACACACCTATTTATGTTACTAAGACGAGCTCATTGACACAGTTAACAAAGGCCATAGAGGCGTTAGTGGCTGATTATAATAATGATTTTGAAGATATTGAAGATGAATATTCTCAGATAAATGAATCAGAGAAGACCGATGCTTTGGAGGAAGCAAGGATTGCCATTGAACAGGTTGTAATCCCAAAAGGAGAACCCGTAGAATTACTTCCTAGACCATCCAACATTATGTTGCTTCAGAAGGATCTCATTCGTAAATATAAACTACAAGCACAGAGAGTTGGTTCAGAGGTGGATGTAAGGCTTCGTATTCTACCATTTCAAGGTGATAAAAAAGATAAAGATTATAACGATGATGGTGATGTTGACAATTATGATGATGATGGTCATGATGAATTGTCTAAAACAAATGGCTCGCCCTACCCAATGAATAGATTGCCGCTCCTGCCTGACTAG 1965 39.95 MFTLPFRSISPHLKIPFKSHTQFLSKPHFVHYHNNKHSDTLIKIDYGSTHCLCSNSGELVLGSSEEEFDMELGRMLRLLPEEMRRKVNEHEELHQLIEVVMDLGRKPLARFPSGDFVLSDDLITVGDLEHATSLVGDFAVDNRAGISRTLHRISAIRNRKGVIIGLTCRVGRAVSGSAKLLQDLVKDGSSLLLIGPPGVGKTTIIRDIARMLANDYRKRVMIVDTSNEIGGDGDIPHSGIGNARRMQVPDTDMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVMNPSLEMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRLELRVHSNLEATVDAILSGRSPNYQVCKFNQGVENITLQSDPIAYDSFIKKSVTTIEGIPQWIDEKRTPDKQVSKESQNDRENTYDRPPLCLFLYGVSETSVLQIFKQLKMEYVLEFTENISEADAILALLSKIKKNSRIQAAAHSNDTPIYVTKTSSLTQLTKAIEALVADYNNDFEDIEDEYSQINESEKTDALEEARIAIEQVVIPKGEPVELLPRPSNIMLLQKDLIRKYKLQAQRVGSEVDVRLRILPFQGDKKDKDYNDDGDVDNYDDDGHDELSKTNGSPYPMNRLPLLPD 654
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01057 654 FunFam uncharacterized protein ycf45 isoform X2 152 369 - -
Aann4g01057 654 Pfam Sporulation stage III, protein AA 163 317 IPR045735 -
Aann4g01057 654 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 195 214 - -
Aann4g01057 654 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 597 616 - -
Aann4g01057 654 Coils Coil 519 546 - -
Aann4g01057 654 Gene3D - 168 332 IPR027417 -
Aann4g01057 654 CDD AAA 188 277 - -
Aann4g01057 654 SMART AAA-5 187 318 IPR003593 GO:0016887(InterPro)
Aann4g01057 654 PANTHER KINASE-RELATED 32 572 - GO:0009507(PANTHER)
Aann4g01057 654 CDD R3H-AAA 550 609 IPR034081 -
Aann4g01057 654 MobiDBLite consensus disorder prediction 615 654 - -
Aann4g01057 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 319 IPR027417 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01057 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:96153546 Aann4g01057 Aann-Chr4:58547412 dispersed
Aann Aann-Chr1:207767702 Aann4g01057 Aann-Chr4:58547412 dispersed