AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01060 ATGACATCCCGCATCATCTTCCGTACCCTCAAATCCACCTCATCGAACCTCCTCCGTCTCCGTCCACTCTCATCCGTCGCCGCCGTTAACCTCCGTCAATGCGCCGTCACGAATAATAACAATGTCCGTTCATACTCGACACGTCAGACGACGTCATCGTTGAATGACCCAAACCCTAACTGGTCAAACAGGCCGCCAAAGGAGACGATATTGTTGGATGGATGTGATTTTGAACATTGGCTTGTGGTTGTTGATAAGCCTGAGGGAGAGCCTACTAGAGATGAGATTATTGATAACTATATTAATACTTTGGCTAAAGTTGTTGGAAGTTATGACGAAGCAAGGATGAAGATCTACTCGGTTTCAACAAGATGCTATTATGCTTTTGGAGCTCTTGTTTCTGAAGAGGATTCTTACAAGCTTAAAGAATTACCTGGAGTTCGTTGGGTGCTCCCTGATTCTTACTTGGATGTTCAAAACAAGGATTACGGAGGTGAACCATTTATTGATGGCAAGGCTGTTCCATATGACCCAAAGTACCATGAAGAGTGGATCAGGAACAATGCTCGGGCCAATGAAAGGAACAGAAGGAATGACAGGCCTCGCAACTTTGACAGATCAAGAAATTTTGAGAGAAGAAGAGAGAACATGCAAACCAACCGTGGGCCCCCAGGAGGTCCACCACCTAGCAACATGGGAGGTCCACCGTCAAACATGGGTGGACCTCCACCCAACATGGGAGAACAACCACCTAACTTGGGCATAAGACCACAAGGTGGTAATATGGGTGGTCCACCACCCAACAATTGGAATAATGGGCCACCACAACATTATGGCGGTGGGCCGCCACATATGGGAGGCGGGATGCCGCCTCAAAACAACATGAGCGGAGGAATGAGGCCTCAGAACATGGCTGGAGGGATGCCTAATAGTGCTCCTCCTAACTACCAGCAGCAGGGTCAGTATGGGCCAAATAATGGAGGAATGCCATATCAATCTAGTCCTGGGCCCAACAATTACCCTCCCAATGTAGGTGGTGGAAACCCCTACCAGAATCAGAATGTTTCTGGAAGAGACATGCCCCCATCCAACTATGAATGA 1101 48.05 MTSRIIFRTLKSTSSNLLRLRPLSSVAAVNLRQCAVTNNNNVRSYSTRQTTSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVDKPEGEPTRDEIIDNYINTLAKVVGSYDEARMKIYSVSTRCYYAFGALVSEEDSYKLKELPGVRWVLPDSYLDVQNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQTNRGPPGGPPPSNMGGPPSNMGGPPPNMGEQPPNLGIRPQGGNMGGPPPNNWNNGPPQHYGGGPPHMGGGMPPQNNMSGGMRPQNMAGGMPNSAPPNYQQQGQYGPNNGGMPYQSSPGPNNYPPNVGGGNPYQNQNVSGRDMPPSNYE 366
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01060 366 MobiDBLite consensus disorder prediction 222 250 - -
Aann4g01060 366 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 25 218 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Aann4g01060 366 MobiDBLite consensus disorder prediction 192 366 - -
Aann4g01060 366 MobiDBLite consensus disorder prediction 45 65 - -
Aann4g01060 366 MobiDBLite consensus disorder prediction 308 366 - -
Aann4g01060 366 Pfam Multiple organellar RNA editing factor 1, MORF domain 77 168 IPR054059 -
Aann4g01060 366 MobiDBLite consensus disorder prediction 192 218 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01060 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
1624 Aann2g03944 Aann4g01060
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr2:108342402 Aann4g01060 Aann-Chr4:58649602 dispersed
Aann Aann-Chr2:108350560 Aann4g01060 Aann-Chr4:58649602 dispersed
Aann Aann-Chr4:58649602 Aann6g02837 Aann-Chr6:80309392 dispersed
Aann Aann-Chr1:90070359 Aann4g01060 Aann-Chr4:58649602 transposed
Aann Aann-Chr8:3897055 Aann4g01060 Aann-Chr4:58649602 transposed
Aann Aann-Chr2:108262306 Aann4g01060 Aann-Chr4:58649602 wgd