AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01066 ATGGGTGATGAAAAAGAAGTTATAAAAAATGATGAGAAAACTGAAAAGGGTTTAAAGAGTAAGAAGAAGAAAAAGGGTATTTTGGGAAGGATTTGGGGTAGTTTGTTTAGGTTGGGTAGTGGTGATGATTTTGAGAAAAGGTTGCAATATATAACTAAAGAGGAAGGGAGTATTGTTATGAGGATGAAGAGGCGGGCTATGCGCTGGAGGAGGACTGCGCGTAATTTGATTATATTTTCGGTTCTTATTGAGTTGGTTGCAATTGGTTATGCTATAATGACAACAAGAACTGTGTACATGGAGTGGAGAATGAGATCATTGCGTGTCTTACCAATGTTTCTTTTCCCCGCACTATCATTCGCTTTGTATTATGGACTTCAGAGCTTCACTAAGTTTTGTGATCGCAGGGATCAGAAAACATTAGAGAAGCTTAGGGCTGAAAGGCAAGCAAAAATTGATGAACTTAAGGAAAGGACTAATTACTACATCACTCAGCAACTCATTCAGAAATATGACCCTGACCCAGCAGCAAAAGCAGCTGCTGCATCTGTCCTTGCATCCAAATTGGGCGCGGATTCAGGCCTAAAAGTGTTTCTTGGGGACGAATCACAACAGAATCCATACGCCACAGGGAAGAGCGGTGATGCTGAGCTTCAACAATCCACTGGTCTTCGTAAACGAAATCAATCGAATACTAGATCTTCTGGAAGCAATGCAGGCCAACAATCCGCTAAAGAAGTGGCTCAATATGAAGAAAATGAGGTTTCTGAGAATTCACCACACGGGCAGCTTGTTGTTAATCATCATAATGCTACATCTTTAGGTGCTCAAGATGGTGGTTGGATTGCTCGAATTGCTGCATTGCTTGTGGGAGAGGACCCCACACAATCGTACGCCCTCATATGTGGCAATTGCCATATGCATAATGGTCTTGCAAGAAAAGAGGAATTCCCCTTCATCACTTACTATTGTCCCCATTGCAATGCTCTGAATAAACCAAAGGACTCAGTGCTACCTTCAAATATAATGTCTCCTGTTTCGGGATCTTCACCGGTAGCAAGTGCAGGTGCTAATTTGATTGAACAAAATAAGGAGTCAAAAGTTGAGAAAGAATCTGCTGCTAGCATTCCCGTGGCCGATGTGGTGGAAGAGAAAGAAGCAACTGAAAGTAAACTGACTGAGGATCCTTCTAGTCATTAG 1200 42.0 MGDEKEVIKNDEKTEKGLKSKKKKKGILGRIWGSLFRLGSGDDFEKRLQYITKEEGSIVMRMKRRAMRWRRTARNLIIFSVLIELVAIGYAIMTTRTVYMEWRMRSLRVLPMFLFPALSFALYYGLQSFTKFCDRRDQKTLEKLRAERQAKIDELKERTNYYITQQLIQKYDPDPAAKAAAASVLASKLGADSGLKVFLGDESQQNPYATGKSGDAELQQSTGLRKRNQSNTRSSGSNAGQQSAKEVAQYEENEVSENSPHGQLVVNHHNATSLGAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEEFPFITYYCPHCNALNKPKDSVLPSNIMSPVSGSSPVASAGANLIEQNKESKVEKESAASIPVADVVEEKEATESKLTEDPSSH 399
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01066 399 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 281 331 IPR019273 -
Aann4g01066 399 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 21 384 IPR040115 GO:0071782(PANTHER)|GO:0071786(InterPro)|GO:0071786(PANTHER)
Aann4g01066 399 MobiDBLite consensus disorder prediction 382 399 - -
Aann4g01066 399 MobiDBLite consensus disorder prediction 363 399 - -
Aann4g01066 399 Coils Coil 138 158 - -
Aann4g01066 399 MobiDBLite consensus disorder prediction 206 259 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01066 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
329 Aann1g02376 Aann4g01066
1627 Aann2g03950 Aann4g01066
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:72649581 Aann4g01066 Aann-Chr4:58753272 wgd
Aann Aann-Chr2:108403160 Aann4g01066 Aann-Chr4:58753272 wgd