AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01070 ATGGCAAACAGGAACTTGGAGAAATTGGCGTCAATAGATGCGCAATTGAGGCTGTTGGTACCTGGTAAAGTATCTGAAGATGATAAGCTGATTGAATATGATGCTTTGCTTTTAGATAAGTTCCTTGATATTCTTCAAGATTTGCATGGTGAAGATCTTAAAGAAACTGTTCAAGAATGCTATGAGCTATCTGCAGAGTATGAAGGCAAGCGTGACCCTAAGAAGCTCGAGGAGCTTGGAAGTGTTTTGACAAGTTTAGATCCCGGGGATTCGATCGTCATTGCAAAAGCTTTCTCTCACATGCTTAACTTGGCGAATCTGGCAGAAGAGGTTCAGATTGCGTATCGTCGCAGGATCAAGTTGAAGAAGGGTGACTTTGCTGATGAAGCTAATGCAACGACTGAATCTGATATCGAGGAGACTTTGAAGAAGATGGTGCATCAGCTTAAGAAGTCCCCTGAAGAGGTCTTTGACGCACTCAAGAATCAGACTGTCGATTTGGTTTTGACTGCTCATCCAACTCAGTCTGTTCGTAGATCTTTGCTTCAGAAGCACGGAAGGATCCGGGACTGTTTGGCTCAGTTATATGCAAAAGACATCACTCCTGATGATAAGCAGGAACTTGATGAGGCTTTGCATAGAGAAATTCAAGCTGCTTTCCGTACAGATGAGATCAGGAGGACTCCTCCAACTCCACAAGATGAGATGAGAGCGGGAATGAGCTACTTCCATGAAACAATCTGGAAGGGTGTTCCTAAATTCTTACGTCGTGTTGACACGGCTCTTAAGAACATTGGGATCAATGAACGTGTTCCATACAATGCCCCTCTTATTCAGTTTTCTTCATGGATGGGTGGTGACCGTGATGGTAATCCGAGGGTGACACCTGAGGTAACAAGGGATGTTTGCTTACTTGCCAGAATGATGGCAGCAAACATGTACTTTTCCCAGATTGAGGATCTAATGTTTGAGATGTCCATGTGGCGTTGTACTGATGAACTTCGTGTTCGAGCAGAAGAACTTTATAGAACAGCAAGGAGTGATGTGAAGCACTACATAGAGTTCTGGAAACAGGTTCCTCCAACTGAACCTTATCGTGTAATTCTTGGAGATGTAAGGGACAAGTTATATAATACACGTGAACGAGCTCGACATCTATTAGCCCATGAGAAATCCGACATTCCAGAAGAGTTTGTTTATACAAATGTTGAACAGTTCTTGGAGCCTCTCGAGCTATGCTACCGATCCCTGTGTGCTTGTGGTGATCGTGTGATTGCTGATGGAAGCCTTCTTGATTTTCTAAGACAAGTGTCCACATTTGGACTCTCGCTAGTAAAACTCGATATAAGGCAAGAATCTGATCGCCACACTGATGTCCTCGACGCCATCACTCAACATTTAGAAGTTGGTTCCTACCGTGAGTGGTCAGAAGAGAAACGCCAAGAATGGCTTCTGTCTGAACTCAGCGGTAAACGTCCACTTTTTGGTGATGATCTTCCCAAAACTGAGGAAATTAAGGATGTTTTGGATACATTCGCTGTCTTAGCAGAACTCCCATCTGATTGTTTTGGTGCTTACATCATTTCAATGGCTACATCACCTTCTGATGTGCTTGCTGTTGAGCTTCTTCAACGTGAATGCCATGTGAAGCAACCGTTACGTGTGGTCCCACTTTTTGAAAAACTTGCTGATCTTGAAGCGGCCCCCGCTGCCATGGCCCGTCTTTTCTCAGTTGACTGGTACACTAAACGGATCAACGGGAAGCAAGAAGTCATGATTGGATACTCTGATTCAGGAAAAGATGCTGGAAGGTTTACTGCTGCATGGCAGCTATACAAAGCACAAGAAGAGCTTATAAAAGTTGCAAAAGAGTTTGGAGTTAAACTCGTCATGTTCCACGGACGTGGTGGGACCGTCGGTAGAGGAGGTGGCCCCACCCATCTTGCTATCCTGTCTCAGCCACCAGAGACCATTCATGGGTCTCTTAGAGTCACAGTTCAAGGAGAGGTTATTGAACAATCTTTTGGTGAGGAACATTTGTGTTTCAGAACACTCCAAAGGTTTTGTGCAGCTACACTTGAGCATGGAATGAACCCCCCAATCTCACCACGACCCGAATGGCGTGAACTTATGGACCAGATAGCAGTTCTTGCAACCGAACAGTACCGTTCAATTGTATTCCAGGAGCCACGTTTTGTCGAGTATTTCCGCCTTGCCACACCGGAACTGGAGTACGGACGTATGAATATCGGAAGTCGCCCAGCAAAAAGAAAACCGAGTGGAGGCATTGAATCACTCCGAGCTATTCCATGGATCTTCGCATGGACTCAGACCAGATTCCATCTCCCGGTTTGGCTCGGGTTCGGGGCAGGATTCAAGCATGTCATTCAAAAGGACAGCAAGAATCTTCAAATGCTACAAGAAATGTACAAAACCTGGCCTTTCTTTAGGGTGACCATTGATTTAGTTGAAATGGTGTTTGCTAAAGGAGACCCAGGTATTGCTGCACTGAATGACAAGCTCCTTGTCTCTGAAGATCTCTGGTCCTTTGGAGAATCTTTGAGGGCAAACTATGAAGAAACCAAAGATTATCTCCTCATGATTGCTGGACACAAGGACCTTCTCGAGGGTGATCCCTACTTGAAACAAAGACTTCGTCTGCGTGATTCATACATCACAACATTGAATGTGTGCCAAACTTATACCCTCAAGCGAATCCGTGATCCAAACTATCATGTGACATTAAGGCCTCATATTTCCAAAGAGTATGCTGAGCCAAGCAAACCTGCAGATGAACTTATCCACTTGAACCCGACTAGTGAGTATGCACCAGGTTTGGAGGACACTCTTATCCTGACCATGAAGGGAATTGCTGCTGGTATGCAGAACACCGGTTAA 2898 44.89 MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKETVQECYELSAEYEGKRDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFADEANATTESDIEETLKKMVHQLKKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEELYRTARSDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERARHLLAHEKSDIPEEFVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEVGSYREWSEEKRQEWLLSELSGKRPLFGDDLPKTEEIKDVLDTFAVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAMARLFSVDWYTKRINGKQEVMIGYSDSGKDAGRFTAAWQLYKAQEELIKVAKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQIAVLATEQYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAGFKHVIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKDYLLMIAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQTYTLKRIRDPNYHVTLRPHISKEYAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 965
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01070 965 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
Aann4g01070 965 Gene3D Phosphoenolpyruvate-pyruvate domain 308 443 - -
Aann4g01070 965 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 33 965 IPR015813 GO:0003824(InterPro)
Aann4g01070 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 965 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0008964(PANTHER)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Aann4g01070 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Aann4g01070 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 Pfam Phosphoenolpyruvate carboxylase 34 965 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Aann4g01070 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01070 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
323 Aann1g02367 Aann4g01070
325 Aann1g02368 Aann4g01070
1629 Aann2g03955 Aann4g01070
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:72595656 Aann4g01070 Aann-Chr4:58995326 dispersed
Aann Aann-Chr2:108628074 Aann4g01070 Aann-Chr4:58995326 dispersed
Aann Aann-Chr2:61522373 Aann4g01070 Aann-Chr4:58995326 transposed
Aann Aann-Chr5:123343552 Aann4g01070 Aann-Chr4:58995326 transposed
Aann Aann-Chr8:130590113 Aann4g01070 Aann-Chr4:58995326 transposed
Aann Aann-Chr1:72587810 Aann4g01070 Aann-Chr4:58995326 wgd
Aann Aann-Chr2:108622934 Aann4g01070 Aann-Chr4:58995326 wgd