AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01106 ATGGGGCTGAATGTATATAGCAAAACCCATGTATTATTCGCGATTATTGGTCTTGTGTCGATATTAGTCGATGTCGATGCAAGTGCAAGCAAATGCGATTTGTTTCAAGGAAATTGGGTGTTGGATAAGACGTATCCACTCTACAACGAGTCGACTTGCCCGTTCTTAGAGAAAGAGTTTAATTGTGTTAATAATGGCCGCCCTGATCGTTTTTATCTTAAATATCGATGGCAGCCCCGTGGCTGCCACTTATCCAGATTTGATGGTCAAAACTTCTTAGAAAAACTAAGAGGGAAAACCATAATGTTTGTAGGAGATTCACTTAGCCGAAATCAATGGTTGTCGATGCTATGCATAATCCACTCATCGATGCCAAAGGCAAATTATGCCGTAAACATCTCACTGGTTAAAGATATGACCACATACACCTTCACGGATTACAACATGCAAGTGACATACCACCACAATCTATACCTAGTGGACATAGTGAAGCAACGATTTGGGAGAGTGTTGAAGTTGGATGTATTGACAGCCGGAAAGCTGTGGTTGGATGTTGACTACCTCGTATTCAACACGTGGCATTGGTGGAATCGTAGAGGAGCCAGCCAACCATTTGATTATATACAAGATGGAAGTCGTATCTACAAGGACATGGACCGTGTCGTTGCTTTTGGGAAGGCCGTTGTTACATGGGGTAAATGGGTTGATGCTAATGTCACTCAGAACAAAACAAAAGTGTTTTTTCAAGGGATATCACCATCTCATTACAATGGCACTGATTGGGGAGAACCAAAGGCAAAATCCTGCTCTGGACAGAAAAGTCCTCTACTAGCTTCCAAATATCCCGGTGTCTCACCACCTGCTTTGGCTGTCCTCAAAAGCTCACTCAAAACAATCAAGAAACCAGTCACTTTGCTCGATATAACTAACCTTTCTTTGCTCCGGAAAGATGGGCACCCGTCATCTTACGGGTTAGGTGCGGTGGATTGCAGCCACTGGTGCCTAGCAGGGGTTCCAGATACTTGGAATGTCTTGCTATACAATCTTATGTTTTGA 1056 43.18 MGLNVYSKTHVLFAIIGLVSILVDVDASASKCDLFQGNWVLDKTYPLYNESTCPFLEKEFNCVNNGRPDRFYLKYRWQPRGCHLSRFDGQNFLEKLRGKTIMFVGDSLSRNQWLSMLCIIHSSMPKANYAVNISLVKDMTTYTFTDYNMQVTYHHNLYLVDIVKQRFGRVLKLDVLTAGKLWLDVDYLVFNTWHWWNRRGASQPFDYIQDGSRIYKDMDRVVAFGKAVVTWGKWVDANVTQNKTKVFFQGISPSHYNGTDWGEPKAKSCSGQKSPLLASKYPGVSPPALAVLKSSLKTIKKPVTLLDITNLSLLRKDGHPSSYGLGAVDCSHWCLAGVPDTWNVLLYNLMF 351
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01106 351 Pfam PMR5 N terminal Domain 31 83 IPR025846 -
Aann4g01106 351 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 22 349 IPR029962 GO:0005794(PANTHER)|GO:0016413(InterPro)|GO:0016413(PANTHER)
Aann4g01106 351 Pfam GDSL-SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 84 348 IPR026057 GO:0016740(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01106 K23877 xyloglucan O-acetyltransferase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:60105629 Aann5g03924 Aann-Chr5:122478119 dispersed
Aann Aann-Chr5:15337680 Aann4g01106 Aann-Chr4:60105629 transposed
Aann Aann-Chr1:72092987 Aann4g01106 Aann-Chr4:60105629 wgd
Aann Aann-Chr2:108894765 Aann4g01106 Aann-Chr4:60105629 wgd