AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aann4g01113 | ATGAAGATTCAGTGTAACGTATGTGAGAAGGCGGAGGCGACGGTGTTATGCTGCGCTGATGAGGCGGCGCTTTGCAGGAGCTGTGATGTTAAGATACACGCTGCTAATAAGCTCGCTAGTAAACATCAGCGCGTTGTGCTCACCAACTCTGATGCCAAGATGCCTAAATGTGATATCTGTCAGGAAACGTTTGGCTACTTCTTTTGTCTGGAAGATAGGGCTTTACTATGCAGAAAATGCGATGTGGCCATACACACGGTCAATACCTTTGTTTCATCACACCAAAGGTTTCTGCTTACTGGAGTGAAAGTAGGGGCTGAAGCTGCTGACCTTGATACACCATCGACTTCAAAGAAGTCAAACGCCACCAAAAATAGTATTCTGTTATCTCCAACTGTTCAATACAACAACCCCGTGCCAGTCCAAGCTGCTCCTAGCTTGCCTTCAACAGGAGGTTCTTCAGTCAATGATATTCAACAATGGCAGTTTGATGAGTTTCTTGGGCTTACTGGCGTCAACCAGAATTACAACTACGTCAAAAATGTCTCATCCAAGGTTGATAAAGGGAAGGTAGGACACTCGGACTGTTCCCCAATTTTAAGAGCTATGGAGGCCGAATTAGATGAATGTTTAGGTCAGGTTTCTGAATCGTCTTGGGCGGTCCCGCAGATCTGTTCACCACCAACTGCATCCAGACTTTGCTGGCCCGAAAGACATGACAATCTTCACCAGTTCGATGTGGCTGCTTTTGTTCCTGATGTATGCTACCAACAAAGTACAAGTAGCCTAAAAAGAAGAAGGCAATAA | 807 | 45.48 | MKIQCNVCEKAEATVLCCADEAALCRSCDVKIHAANKLASKHQRVVLTNSDAKMPKCDICQETFGYFFCLEDRALLCRKCDVAIHTVNTFVSSHQRFLLTGVKVGAEAADLDTPSTSKKSNATKNSILLSPTVQYNNPVPVQAAPSLPSTGGSSVNDIQQWQFDEFLGLTGVNQNYNYVKNVSSKVDKGKVGHSDCSPILRAMEAELDECLGQVSESSWAVPQICSPPTASRLCWPERHDNLHQFDVAAFVPDVCYQQSTSSLKRRRQ | 268 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aann4g01113 | 268 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
| Aann4g01113 | 268 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Aann4g01113 | 268 | CDD | Bbox1-BBX-like | 56 | 99 | IPR049808 | - | |
| Aann4g01113 | 268 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270(InterPro) | |
| Aann4g01113 | 268 | Pfam | B-box zinc finger | 3 | 45 | IPR000315 | GO:0008270(InterPro) | |
| Aann4g01113 | 268 | CDD | Bbox1-BBX-like | 5 | 47 | IPR049808 | - | |
| Aann4g01113 | 268 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 256 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
| Aann4g01113 | 268 | Gene3D | Classic Zinc Finger | 1 | 93 | - | - | |
| Aann4g01113 | 268 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Aann4g01113 | 268 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
| Aann4g01113 | 268 | FunFam | B-box zinc finger protein 22 | 1 | 93 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aann4g01113 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 316 | Aann1g02313 | Aann4g01113 | |
| 1632 | Aann2g03969 | Aann4g01113 | |
| 1659 | Aann2g04134 | Aann4g01113 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Aann | Aann-Chr4:60264025 | Aann4g01429 | Aann-Chr4:71759825 | dispersed | |
| Aann | Aann-Chr1:71518644 | Aann4g01113 | Aann-Chr4:60264025 | transposed | |
| Aann | Aann-Chr1:72079972 | Aann4g01113 | Aann-Chr4:60264025 | wgd | |
| Aann | Aann-Chr2:109007498 | Aann4g01113 | Aann-Chr4:60264025 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Aann1g02313 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 50.161 | 7.81e-92 | 273.0 | |
| Aann1g02501 | . | 1 | 103 | C2C2-CO-like Transcription Factor family | AT4G27310 | 52.427 | 1.39e-29 | 107.0 | |
| Aann1g03614 | . | 339 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 71.429 | 5.23e-13 | 58.5 | |
| Aann1g03615 | . | 191 | 230 | C2C2-CO-like Transcription Factor family | AT3G07650 | 55.0 | 5.88e-07 | 42.0 | |
| Aann1g03616 | ACH | 1 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 55.297 | 4.96e-137 | 393.0 | |
| Aann1g04690 | ACH | 1 | 318 | C2C2-CO-like Transcription Factor family | AT1G75540 | 44.478 | 2.17e-69 | 217.0 | |
| Aann1g05890 | ACH | 1 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 52.835 | 1.43e-122 | 356.0 | |
| Aann2g01697 | . | 9 | 328 | C2C2-CO-like Transcription Factor family | AT2G47890 | 45.652 | 2.51e-93 | 280.0 | |
| Aann2g03179 | ACH | 285 | 401 | C2C2-CO-like Transcription Factor family | AT1G68520 | 44.068 | 1.57e-20 | 90.9 | |
| Aann2g03969 | ACH | 1 | 299 | C2C2-CO-like Transcription Factor family | AT1G78600 | 52.244 | 1.17e-94 | 280.0 | |
| Aann3g01587 | . | 284 | 399 | C2C2-CO-like Transcription Factor family | AT1G68520 | 41.727 | 2.86e-20 | 90.1 | |
| Aann3g02269 | ACH | 3 | 106 | C2C2-CO-like Transcription Factor family | AT4G27310 | 50.476 | 2.40e-31 | 112.0 | |
| Aann3g03093 | ACH | 258 | 331 | C2C2-CO-like Transcription Factor family | AT5G57660 | 40.541 | 8.06e-10 | 57.4 | |
| Aann3g03762 | ACH | 254 | 332 | C2C2-CO-like Transcription Factor family | AT5G15850 | 43.902 | 3.05e-10 | 58.2 | |
| Aann3g05216 | ACH | 9 | 347 | C2C2-CO-like Transcription Factor family | AT3G02380 | 51.451 | 3.13e-118 | 345.0 | |
| Aann4g00700 | . | 252 | 330 | C2C2-CO-like Transcription Factor family | AT5G15850 | 34.177 | 1.58e-09 | 55.8 | |
| Aann4g01113 | ACH | 1 | 298 | C2C2-CO-like Transcription Factor family | AT1G78600 | 50.164 | 2.00e-80 | 243.0 | |
| Aann4g01232 | ACH | 1 | 373 | C2C2-CO-like Transcription Factor family | AT5G48250 | 52.392 | 9.42e-130 | 376.0 | |
| Aann4g01429 | ACH | 1 | 196 | C2C2-CO-like Transcription Factor family | AT1G75540 | 55.0 | 2.57e-65 | 202.0 | |
| Aann4g03836 | . | 8 | 274 | C2C2-CO-like Transcription Factor family | AT2G24790 | 45.018 | 2.03e-66 | 206.0 | |
| Aann5g01561 | . | 272 | 319 | C2C2-CO-like Transcription Factor family | AT3G02380 | 62.5 | 1.01e-15 | 71.6 | |
| Aann5g01608 | ACH | 1 | 331 | C2C2-CO-like Transcription Factor family | AT1G75540 | 41.926 | 4.33e-76 | 234.0 | |
| Aann5g01609 | ACH | 1 | 331 | C2C2-CO-like Transcription Factor family | AT1G75540 | 41.926 | 4.33e-76 | 234.0 | |
| Aann5g03628 | . | 1 | 183 | C2C2-CO-like Transcription Factor family | AT4G38960 | 60.094 | 2.16e-84 | 246.0 | |
| Aann5g03696 | ACH | 4 | 170 | C2C2-CO-like Transcription Factor family | AT5G54470 | 43.023 | 1.15e-29 | 108.0 | |
| Aann6g00712 | ACH | 126 | 276 | C2C2-CO-like Transcription Factor family | AT2G24790 | 25.389 | 2.65e-11 | 61.6 | |
| Aann6g02530 | ACH | 334 | 388 | C2C2-CO-like Transcription Factor family | AT5G24930 | 49.091 | 1.85e-11 | 63.5 | |
| Aann6g03157 | ACH | 235 | 338 | C2C2-CO-like Transcription Factor family | AT5G15850 | 37.143 | 5.20e-13 | 67.4 | |
| Aann7g00282 | ACH | 270 | 386 | C2C2-CO-like Transcription Factor family | AT5G24930 | 35.246 | 5.16e-12 | 65.1 | |
| Aann8g01946 | . | 185 | 270 | C2C2-CO-like Transcription Factor family | AT2G24790 | 39.535 | 7.06e-11 | 58.9 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Aann | zf-B_box | 1.9e-07 | CL0782 | TR | Others |