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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01185 ATGGCAACACAAGCTTTGGTCTCATCATCATCACTCACATCCTCAGTTGAGTCTGCTAGACAAATCCTTGGTGCAAGACCAGCTTTCACAACTACAAGAAAAGTTTCATTTGTTGTCAAAGCTGCTTCCACCCCTCCTGTTAAGCAAGGAGACAGGCAACTATGGTTTGCATCCAAGCAATCTCTTTCTTACCTGGATGGAACTCTCCCAGGTGACTTTGGATTCGACCCACTTGGTCTTTCCGACCCAGAAGGGACCGGAGGATTCATTGAACCTAAGTGGCTAGCTTACGGAGAGGTTATCAATGGACGGTTTGCCATGTTGGGTGCAGCCGGAGCTATTGCACCCGAAATTCTAGGCAAGCTTGGACTCATCCCAGCTGAAACTGCCCTTCCATGGTTCAAGACAGGTGTCATCCCCCCAGCCGGCACATACAACTACTGGGCTGACCCTTTCACCCTATTTGTATTAGAAATGGCACTTATGGGCTTTGCAGAACACAGAAGACTACAAGATTGGTACAACCCAGGATCAATGGGAAAACAATACTTTTTGGGTTTGGAAAAAGGGTTTTCAGGGTCCGGCGACCCAGCATACCCAGGTGGCCCATTCTTTAACCCTCTTGGGTTTGGGAAAGATGAGAAGTCGATGAAGGAATTGAAGCTAAAAGAGATCAAGAACGGTAGATTGGCTATGTTGGCTATCTTAGGTTACTTCATTCAGGGTTTGGTGACTGGGGTTGGACCTTTTCAGAACCTTTTGGATCATTTGGCTGATCCTGTCAACAACAATGTCTTGACCAGCCTTAAGTTCCACTAG 819 47.01 MATQALVSSSSLTSSVESARQILGARPAFTTTRKVSFVVKAASTPPVKQGDRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKLGLIPAETALPWFKTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFSGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 272
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01185 272 Pfam Chlorophyll A-B binding protein 63 242 IPR022796 -
Aann4g01185 272 FunFam Chlorophyll a-b binding protein, chloroplastic 53 271 - -
Aann4g01185 272 Gene3D Chlorophyll a-b binding protein domain 53 271 - -
Aann4g01185 272 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Aann4g01185 272 SUPERFAMILY Chlorophyll a-b binding protein 51 268 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01185 K08909 light-harvesting complex I chlorophyll a/b binding protein 3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:64320879 Aann4g04832 Aann-Chr4:157649378 dispersed
Aann Aann-Chr2:49954648 Aann4g01185 Aann-Chr4:64320879 transposed
Aann Aann-Chr5:22625724 Aann4g01185 Aann-Chr4:64320879 transposed
Aann Aann-Chr1:87099253 Aann4g01185 Aann-Chr4:64320879 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g00123 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 86.567 1.21e-165 457.0
Aann1g00125 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 87.266 4.85e-169 466.0
Aann1g00126 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 87.313 4.43e-168 463.0
Aann1g03176 ACH 1 258 Chloroplast and Mitochondria gene family AT1G15820 81.008 7.86e-150 417.0
Aann1g03557 . 1 264 Chloroplast and Mitochondria gene family AT2G05100 90.53 0.0 499.0
Aann1g03559 . 107 266 Chloroplast and Mitochondria gene family AT3G27690 91.25 1.54e-106 303.0
Aann1g03561 . 107 266 Chloroplast and Mitochondria gene family AT3G27690 91.875 2.55e-107 305.0
Aann1g03563 . 1 265 Chloroplast and Mitochondria gene family AT2G05100 88.679 1.56e-179 492.0
Aann1g03843 . 7 343 Chloroplast and Mitochondria gene family AT1G72820 68.696 1.32e-171 479.0
Aann1g04404 . 3 280 Chloroplast and Mitochondria gene family AT4G10340 86.022 1.28e-155 433.0
Aann1g04529 . 37 251 Chloroplast and Mitochondria gene family AT3G61470 47.248 1.67e-62 196.0
Aann1g04866 ACH 38 255 Chloroplast and Mitochondria gene family AT3G61470 52.752 1.23e-75 228.0
Aann1g05300 ACH 5 367 Chloroplast and Mitochondria gene family AT5G14040 70.109 1.60e-180 503.0
Aann1g05925 . 2 320 Chloroplast and Mitochondria gene family AT5G15640 76.489 0.0 505.0
Aann2g00714 . 12 187 Chloroplast and Mitochondria gene family AT1G17530 62.5 7.82e-70 208.0
Aann2g01069 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 86.94 9.33e-168 462.0
Aann2g01318 ACH 3 218 Chloroplast and Mitochondria gene family AT1G14730 39.352 1.71e-54 174.0
Aann2g01319 ACH 6 214 Chloroplast and Mitochondria gene family AT4G25570 40.67 3.81e-56 176.0
Aann2g02193 . 14 287 Chloroplast and Mitochondria gene family AT5G01530 85.401 4.54e-166 460.0
Aann2g03355 . 1 343 Chloroplast and Mitochondria gene family AT1G72820 70.435 7.91e-167 467.0
Aann2g03631 . 10 187 Chloroplast and Mitochondria gene family AT1G17530 63.536 8.11e-74 218.0
Aann2g04574 . 153 258 Chloroplast and Mitochondria gene family AT1G15820 85.849 2.12e-64 194.0
Aann2g04575 ACH 1 125 Chloroplast and Mitochondria gene family AT1G15820 78.125 1.04e-59 183.0
Aann2g04763 . 43 410 Chloroplast and Mitochondria gene family AT2G28800 76.762 0.0 600.0
Aann2g05012 . 3 325 Chloroplast and Mitochondria gene family AT1G07030 69.789 8.51e-159 445.0
Aann2g05122 ACH 1 72 Chloroplast and Mitochondria gene family AT5G05370 69.444 1.22e-35 113.0
Aann2g05800 . 2 305 Chloroplast and Mitochondria gene family AT2G47490 75.244 2.65e-157 440.0
Aann2g06125 . 1 347 Chloroplast and Mitochondria gene family AT1G72820 66.571 8.10e-158 444.0
Aann3g00853 . 29 300 Chloroplast and Mitochondria gene family AT2G47490 35.052 1.07e-42 147.0
Aann3g01215 ACH 2 228 Chloroplast and Mitochondria gene family AT5G38630 64.912 4.81e-108 309.0
Aann3g01661 . 9 236 Chloroplast and Mitochondria gene family AT1G26100 66.667 1.88e-97 282.0
Aann3g01726 ACH 33 319 Chloroplast and Mitochondria gene family AT1G25380 66.899 2.26e-140 399.0
Aann3g02050 . 17 305 Chloroplast and Mitochondria gene family AT2G17270 68.166 6.80e-158 441.0
Aann3g02695 . 32 254 Chloroplast and Mitochondria gene family AT3G61470 90.135 1.01e-149 417.0
Aann3g02861 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 77.551 9.06e-161 446.0
Aann3g02862 . 35 267 Chloroplast and Mitochondria gene family AT1G29930 90.987 2.53e-155 430.0
Aann3g02864 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 87.266 1.27e-168 465.0
Aann3g02865 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 86.891 1.32e-167 462.0
Aann3g02928 . 46 271 Chloroplast and Mitochondria gene family AT4G03320 36.91 4.24e-43 145.0
Aann3g03701 . 1 239 Chloroplast and Mitochondria gene family AT3G54890 82.5 3.31e-144 401.0
Aann3g03864 . 1 215 Chloroplast and Mitochondria gene family AT4G25570 67.593 9.70e-105 301.0
Aann3g04233 . 183 286 Chloroplast and Mitochondria gene family AT2G47490 30.841 1.11e-09 53.5
Aann3g04260 . 37 317 Chloroplast and Mitochondria gene family AT1G25380 26.059 1.17e-29 114.0
Aann3g04602 . 1 239 Chloroplast and Mitochondria gene family AT3G54890 81.667 9.31e-142 395.0
Aann3g05183 ACH 1 228 Chloroplast and Mitochondria gene family AT5G38630 69.737 1.21e-117 333.0
Aann3g05558 . 1 372 Chloroplast and Mitochondria gene family AT5G14040 77.005 0.0 573.0
Aann3g05964 . 38 325 Chloroplast and Mitochondria gene family AT1G76570 76.389 8.94e-172 479.0
Aann4g01185 . 18 273 Chloroplast and Mitochondria gene family AT1G61520 88.281 4.25e-168 464.0
Aann4g02534 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 88.806 8.91e-174 480.0
Aann4g02535 . 1 193 Chloroplast and Mitochondria gene family AT1G29930 87.113 1.16e-118 335.0
Aann4g03823 . 125 250 Chloroplast and Mitochondria gene family AT2G18710 92.063 4.29e-79 241.0
Aann4g04832 . 51 257 Chloroplast and Mitochondria gene family AT3G61470 67.633 1.22e-102 300.0
Aann4g05251 . 1 346 Chloroplast and Mitochondria gene family AT1G72820 63.584 4.53e-149 421.0
Aann5g00878 . 2 265 Chloroplast and Mitochondria gene family AT2G05100 67.416 1.98e-122 348.0
Aann5g00890 . 5 354 Chloroplast and Mitochondria gene family AT5G54290 67.027 5.85e-148 420.0
Aann5g01038 ACH 1 369 Chloroplast and Mitochondria gene family AT5G14040 71.545 0.0 546.0
Aann5g01407 ACH 34 255 Chloroplast and Mitochondria gene family AT3G61470 52.703 1.45e-75 228.0
Aann5g03407 . 1 187 Chloroplast and Mitochondria gene family AT1G17530 63.102 5.04e-75 221.0
Aann5g04349 . 34 404 Chloroplast and Mitochondria gene family AT2G28800 56.962 1.85e-151 440.0
Aann5g04863 ACH 33 317 Chloroplast and Mitochondria gene family AT1G25380 66.667 7.24e-139 397.0
Aann5g05107 ACH 5 208 Chloroplast and Mitochondria gene family AT4G25570 43.689 5.25e-55 174.0
Aann5g05109 ACH 8 223 Chloroplast and Mitochondria gene family AT1G14730 59.259 1.94e-89 261.0
Aann5g05491 . 37 259 Chloroplast and Mitochondria gene family AT1G07030 33.778 2.19e-26 103.0
Aann6g00678 . 18 316 Chloroplast and Mitochondria gene family AT1G07030 29.236 1.19e-31 123.0
Aann7g00945 . 33 303 Chloroplast and Mitochondria gene family AT1G25380 29.236 4.69e-14 70.5
Aann7g01202 . 5 304 Chloroplast and Mitochondria gene family AT2G17270 67.333 1.24e-153 431.0
Aann8g00313 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 85.019 1.19e-163 452.0
Aann8g00314 . 1 267 Chloroplast and Mitochondria gene family AT1G29930 87.266 2.06e-167 462.0
Aann8g00315 . 6 267 Chloroplast and Mitochondria gene family AT1G29930 87.786 2.67e-165 456.0
Aann8g01719 ACH 1 72 Chloroplast and Mitochondria gene family AT5G05370 65.278 9.70e-32 103.0
Aann9g00621 ACH 1 364 Chloroplast and Mitochondria gene family AT5G14040 75.824 0.0 551.0